Variant report

Variant	rs9871160
Chromosome Location	chr3:136452728-136452729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs34992220	0.87[ASN][1000 genomes]
rs61322732	0.83[ASN][1000 genomes]
rs61508594	0.83[ASN][1000 genomes]
rs61790842	0.83[ASN][1000 genomes]
rs6439656	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6795227	0.85[ASN][1000 genomes]
rs9812541	0.80[ASN][1000 genomes]
rs9813590	0.80[ASN][1000 genomes]
rs9853960	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136426600-136453400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:136431000-136454600	Weak transcription	Hela-S3	cervix
3	chr3:136432400-136468200	Weak transcription	Aorta	Aorta
4	chr3:136432600-136454000	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:136433200-136462600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:136438000-136458000	Weak transcription	Esophagus	oesophagus
7	chr3:136438800-136461200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:136439200-136454400	Weak transcription	Fetal Stomach	stomach
9	chr3:136444000-136455000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr3:136444200-136455000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:136445200-136453400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:136445400-136460000	Weak transcription	Gastric	stomach
13	chr3:136446400-136453600	Weak transcription	Fetal Heart	heart
14	chr3:136446400-136460000	Weak transcription	K562	blood
15	chr3:136448000-136453000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:136448000-136453200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:136448000-136453800	Weak transcription	Ovary	ovary
18	chr3:136448000-136455600	Weak transcription	Fetal Lung	lung
19	chr3:136448000-136460800	Weak transcription	Brain Germinal Matrix	brain
20	chr3:136448200-136453200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:136448200-136453200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:136448200-136453400	Weak transcription	Adipose Nuclei	Adipose
23	chr3:136448200-136453600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:136448200-136453800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:136448200-136454000	Enhancers	Brain Substantia Nigra	brain
26	chr3:136448200-136455000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr3:136448200-136459800	Weak transcription	Osteobl	bone
28	chr3:136448200-136460000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:136448200-136467600	Weak transcription	HSMM	muscle
30	chr3:136448200-136467800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:136448200-136467800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:136448200-136467800	Weak transcription	HSMMtube	muscle
33	chr3:136448400-136453200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr3:136448400-136455400	Weak transcription	NH-A	brain
35	chr3:136448400-136459800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:136448600-136460200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr3:136448600-136462800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:136448600-136463800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:136448600-136467600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:136449000-136453800	Weak transcription	Right Atrium	heart
41	chr3:136449000-136454000	Weak transcription	Lung	lung
42	chr3:136449000-136470000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:136449200-136453400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:136449200-136454600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr3:136449800-136462400	Weak transcription	Dnd41	blood
46	chr3:136450000-136453000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:136450000-136453800	Weak transcription	Spleen	Spleen
48	chr3:136450200-136461200	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr3:136450400-136453000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr3:136450400-136453200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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