Variant report

Variant	rs9875034
Chromosome Location	chr3:136511391-136511392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136499197..136501261-chr3:136509704..136512204,2	K562	blood:
2	chr3:136470803..136472971-chr3:136508761..136512286,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction
ENSG00000261758	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55646943	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61322732	0.88[EUR][1000 genomes]
rs61508594	0.88[EUR][1000 genomes]
rs73230097	1.00[EUR][1000 genomes]
rs9812541	0.81[EUR][1000 genomes]
rs9824147	0.85[EUR][1000 genomes]
rs9834574	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136506400-136511400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:136506400-136521000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:136506600-136511400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:136506600-136511800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:136506600-136521000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:136506600-136521200	Weak transcription	Hela-S3	cervix
7	chr3:136506800-136511400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:136506800-136511600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:136506800-136511800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:136508800-136513600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:136510000-136511400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:136511000-136513000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:136511200-136511400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr3:136511200-136511600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:136511200-136511600	Enhancers	Brain Angular Gyrus	brain
16	chr3:136511200-136511600	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:136511200-136511600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr3:136511200-136511600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:136511200-136511600	Enhancers	Brain Substantia Nigra	brain
20	chr3:136511200-136512400	Enhancers	Brain Hippocampus Middle	brain
21	chr3:136511200-136512400	Enhancers	Fetal Brain Male	brain
22	chr3:136511200-136513000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:136511200-136513000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:136511200-136513000	Enhancers	Brain Anterior Caudate	brain
25	chr3:136511200-136513800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:136511200-136514400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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