Variant report

Variant	rs12107125
Chromosome Location	chr3:136464612-136464613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136462295..136467701-chr3:136468356..136473185,8	MCF-7	breast:
2	chr3:136464546..136467728-chr3:136469677..136472541,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction
ENSG00000261758	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10155016	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10155017	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10513014	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1280624	0.86[ASN][1000 genomes]
rs1681817	0.92[ASN][1000 genomes]
rs1729951	0.87[ASN][1000 genomes]
rs28489907	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34992220	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35874192	0.94[ASN][1000 genomes]
rs4038578	0.84[ASN][1000 genomes]
rs6764567	0.86[ASN][1000 genomes]
rs6771713	0.92[AFR][1000 genomes]
rs6789329	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6799699	0.92[AFR][1000 genomes]
rs6802702	0.90[ASN][1000 genomes]
rs7616204	0.88[ASN][1000 genomes]
rs900818	0.92[ASN][1000 genomes]
rs9813590	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9813596	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9836231	0.81[ASN][1000 genomes]
rs9853960	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9881078	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136432400-136468200	Weak transcription	Aorta	Aorta
2	chr3:136448200-136467600	Weak transcription	HSMM	muscle
3	chr3:136448200-136467800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:136448200-136467800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:136448200-136467800	Weak transcription	HSMMtube	muscle
6	chr3:136448600-136467600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:136449000-136470000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:136450400-136467800	Weak transcription	Psoas Muscle	Psoas
9	chr3:136450600-136467800	Weak transcription	Primary B cells from cord blood	blood
10	chr3:136450800-136467800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:136450800-136467800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:136450800-136467800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:136450800-136469000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:136451000-136467800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:136453200-136466000	Weak transcription	Placenta	Placenta
16	chr3:136453600-136467800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:136453800-136467600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:136454200-136465400	Weak transcription	Adipose Nuclei	Adipose
19	chr3:136454200-136465400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:136454200-136467800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:136454200-136469200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr3:136454200-136470000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:136454400-136467800	Weak transcription	Liver	Liver
24	chr3:136454400-136467800	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:136454400-136469200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:136454600-136467800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr3:136454800-136469200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:136455000-136466000	Weak transcription	Spleen	Spleen
29	chr3:136455000-136467000	Weak transcription	Left Ventricle	heart
30	chr3:136455800-136467800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:136456000-136465400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr3:136456000-136466200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:136456000-136467800	Weak transcription	NH-A	brain
34	chr3:136456200-136467800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:136456400-136467000	Weak transcription	Lung	lung
36	chr3:136456400-136467400	Weak transcription	Right Ventricle	heart
37	chr3:136456400-136468000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:136456600-136467800	Weak transcription	Fetal Intestine Large	intestine
39	chr3:136457400-136470000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr3:136457600-136466200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:136458400-136470000	Weak transcription	Esophagus	oesophagus
42	chr3:136459800-136467800	Weak transcription	Fetal Kidney	kidney
43	chr3:136460200-136467800	Weak transcription	NHEK	skin
44	chr3:136460400-136468000	Weak transcription	Gastric	stomach
45	chr3:136460800-136467600	Weak transcription	K562	blood
46	chr3:136460800-136467800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr3:136461200-136467600	Weak transcription	Hela-S3	cervix
48	chr3:136461200-136467600	Weak transcription	Osteobl	bone
49	chr3:136461200-136467800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr3:136461200-136467800	Weak transcription	A549	lung

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