Variant report

Variant	rs10513213
Chromosome Location	chr9:116519285-116519286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10981856	1.00[CEU][hapmap]
rs6478032	0.87[AMR][1000 genomes]
rs6478033	0.87[AMR][1000 genomes]
rs7030932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7039786	1.00[CEU][hapmap]
rs7860886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7871297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116518200-116521200	Weak transcription	Pancreas	Pancrea
2	chr9:116518600-116519600	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:116518800-116519400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:116518800-116519600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:116519000-116519400	Enhancers	Fetal Lung	lung
6	chr9:116519000-116519400	Enhancers	HSMM	muscle
7	chr9:116519000-116519400	Enhancers	HSMMtube	muscle
8	chr9:116519000-116519400	Enhancers	NH-A	brain
9	chr9:116519000-116519400	Enhancers	Osteobl	bone
10	chr9:116519000-116519600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:116519000-116519600	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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