Variant report

Variant	rs6478033
Chromosome Location	chr9:116527705-116527706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10513213	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs10981856	1.00[CEU][hapmap]
rs16908270	1.00[EUR][1000 genomes]
rs16908588	1.00[EUR][1000 genomes]
rs1961625	1.00[EUR][1000 genomes]
rs41276825	1.00[EUR][1000 genomes]
rs56015224	1.00[EUR][1000 genomes]
rs57815034	1.00[EUR][1000 genomes]
rs59067972	1.00[EUR][1000 genomes]
rs59095451	1.00[EUR][1000 genomes]
rs61299217	1.00[EUR][1000 genomes]
rs6478032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7030932	1.00[CEU][hapmap]
rs7039786	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73546467	1.00[EUR][1000 genomes]
rs73548592	1.00[EUR][1000 genomes]
rs73550441	1.00[EUR][1000 genomes]
rs7860886	0.87[AMR][1000 genomes]
rs7871297	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116527600-116527800	Bivalent Enhancer	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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