Variant report

Variant	rs73550441
Chromosome Location	chr9:116620599-116620600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16908270	1.00[EUR][1000 genomes]
rs16908588	1.00[EUR][1000 genomes]
rs1961625	1.00[EUR][1000 genomes]
rs56015224	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57815034	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59067972	1.00[EUR][1000 genomes]
rs59095451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61299217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6478032	1.00[EUR][1000 genomes]
rs6478033	1.00[EUR][1000 genomes]
rs7039786	1.00[EUR][1000 genomes]
rs73546467	1.00[EUR][1000 genomes]
rs73548592	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658325	1.00[EUR][1000 genomes]
rs73658326	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116619400-116621000	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr9:116619600-116621200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:116619800-116621000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:116619800-116621200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:116619800-116621400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:116620000-116621200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:116620000-116621200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:116620000-116621200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:116620000-116621400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:116620000-116621400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:116620000-116621400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:116620000-116621400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:116620200-116620600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:116620200-116620600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:116620200-116621200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:116620200-116621400	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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