Variant report

Variant	rs61299217
Chromosome Location	chr9:116562326-116562327
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16908270	1.00[EUR][1000 genomes]
rs16908588	1.00[EUR][1000 genomes]
rs1961625	1.00[EUR][1000 genomes]
rs56015224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57815034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59067972	1.00[EUR][1000 genomes]
rs59095451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6478032	1.00[EUR][1000 genomes]
rs6478033	1.00[EUR][1000 genomes]
rs7039786	1.00[EUR][1000 genomes]
rs73546467	1.00[EUR][1000 genomes]
rs73548592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73655897	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116557800-116569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links