Variant report

Variant	rs16908270
Chromosome Location	chr9:116474595-116474596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16908588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1961625	1.00[EUR][1000 genomes]
rs41276825	1.00[EUR][1000 genomes]
rs56015224	1.00[EUR][1000 genomes]
rs57815034	1.00[EUR][1000 genomes]
rs59067972	1.00[EUR][1000 genomes]
rs59095451	1.00[EUR][1000 genomes]
rs61299217	1.00[EUR][1000 genomes]
rs6478032	1.00[EUR][1000 genomes]
rs6478033	1.00[EUR][1000 genomes]
rs7039786	1.00[EUR][1000 genomes]
rs73546467	1.00[EUR][1000 genomes]
rs73548592	1.00[EUR][1000 genomes]
rs73550441	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116468600-116477200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:116473200-116474600	Enhancers	HSMM	muscle
3	chr9:116474000-116474600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr9:116474000-116474600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:116474000-116474600	Enhancers	Duodenum Mucosa	Duodenum
6	chr9:116474000-116474600	Enhancers	Fetal Lung	lung
7	chr9:116474000-116474600	Enhancers	Ovary	ovary
8	chr9:116474000-116474600	Enhancers	NHLF	lung
9	chr9:116474000-116474800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:116474000-116475200	Enhancers	Fetal Muscle Leg	muscle
11	chr9:116474200-116474600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:116474200-116474600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr9:116474200-116482200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:116474400-116478200	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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