Variant report

Variant	rs56015224
Chromosome Location	chr9:116634747-116634748
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16908270	1.00[EUR][1000 genomes]
rs16908588	1.00[EUR][1000 genomes]
rs1961625	1.00[EUR][1000 genomes]
rs57815034	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59067972	1.00[EUR][1000 genomes]
rs59095451	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61299217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6478032	1.00[EUR][1000 genomes]
rs6478033	1.00[EUR][1000 genomes]
rs7039786	1.00[EUR][1000 genomes]
rs73546467	1.00[EUR][1000 genomes]
rs73548592	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550441	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73658325	1.00[EUR][1000 genomes]
rs73658326	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116634400-116635400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:116634400-116636000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:116634400-116636000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:116634400-116637800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:116634600-116634800	Enhancers	Fetal Thymus	thymus
6	chr9:116634600-116635200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr9:116634600-116635200	Flanking Active TSS	HMEC	breast
8	chr9:116634600-116635800	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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