Variant report

Variant	rs57815034
Chromosome Location	chr9:116606650-116606651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16908270	1.00[EUR][1000 genomes]
rs16908588	1.00[EUR][1000 genomes]
rs1961625	1.00[EUR][1000 genomes]
rs56015224	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59067972	1.00[EUR][1000 genomes]
rs59095451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61299217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6478032	1.00[EUR][1000 genomes]
rs6478033	1.00[EUR][1000 genomes]
rs7039786	1.00[EUR][1000 genomes]
rs73546467	1.00[EUR][1000 genomes]
rs73548592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550441	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116606400-116607400	Enhancers	Fetal Muscle Leg	muscle
2	chr9:116606600-116607200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:116606600-116607400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:116606600-116607400	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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