Variant report

Variant	rs73546467
Chromosome Location	chr9:116451111-116451112
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16908270	1.00[EUR][1000 genomes]
rs16908588	1.00[EUR][1000 genomes]
rs1961625	1.00[EUR][1000 genomes]
rs41276825	1.00[EUR][1000 genomes]
rs56015224	1.00[EUR][1000 genomes]
rs56947995	0.81[AFR][1000 genomes]
rs57815034	1.00[EUR][1000 genomes]
rs59067972	1.00[EUR][1000 genomes]
rs59095451	1.00[EUR][1000 genomes]
rs61299217	1.00[EUR][1000 genomes]
rs6478032	1.00[EUR][1000 genomes]
rs6478033	1.00[EUR][1000 genomes]
rs7039786	1.00[EUR][1000 genomes]
rs73548592	1.00[EUR][1000 genomes]
rs73550441	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv466513	chr9:116444269-116472236	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv615221	chr9:116444269-116472236	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116449800-116451200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:116450000-116451200	Enhancers	Spleen	Spleen
3	chr9:116450600-116451400	Enhancers	Ovary	ovary
4	chr9:116450800-116451200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:116451000-116451200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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