Variant report

Variant	rs56947995
Chromosome Location	chr9:116457707-116457708
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10513208	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11999448	0.92[EUR][1000 genomes]
rs16908123	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16908169	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16908217	0.90[EUR][1000 genomes]
rs59429434	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60592547	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61521965	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7035387	0.92[EUR][1000 genomes]
rs73546467	0.81[AFR][1000 genomes]
rs73546487	0.92[EUR][1000 genomes]
rs73655883	0.90[EUR][1000 genomes]
rs877838	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv466513	chr9:116444269-116472236	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv615221	chr9:116444269-116472236	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116453200-116468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116455000-116464400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:116456000-116458200	Weak transcription	Aorta	Aorta
4	chr9:116456600-116458800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:116456800-116458400	Enhancers	HMEC	breast
6	chr9:116456800-116458400	Enhancers	NHEK	skin
7	chr9:116456800-116458600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr9:116456800-116458600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr9:116456800-116458800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:116456800-116459200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr9:116456800-116460600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:116457000-116457800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:116457200-116458400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr9:116457200-116458400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr9:116457400-116458400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr9:116457400-116458600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr9:116457400-116458600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr9:116457400-116458600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr9:116457600-116458400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:116457600-116458600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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