Variant report

Variant	rs16908169
Chromosome Location	chr9:116468579-116468580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POLE3-5	chr9:116468537-116468847	NONHSAT134360

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10513208	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11999448	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16908123	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16908217	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56947995	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59429434	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60592547	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61521965	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035387	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73546487	0.97[EUR][1000 genomes]
rs73655883	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs877838	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv466513	chr9:116444269-116472236	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv615221	chr9:116444269-116472236	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116466200-116469200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr9:116466800-116469600	Enhancers	HepG2	liver
3	chr9:116467600-116468600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr9:116467600-116468600	Enhancers	Stomach Mucosa	stomach
5	chr9:116467600-116468800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:116467600-116469000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr9:116467600-116469000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:116467600-116469000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:116467600-116469000	Enhancers	Pancreas	Pancrea
10	chr9:116467600-116469000	Enhancers	Spleen	Spleen
11	chr9:116467600-116469200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr9:116467600-116469200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:116467600-116469200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:116467800-116469000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr9:116467800-116469000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:116468000-116468600	Enhancers	A549	lung
17	chr9:116468000-116469000	Enhancers	HUVEC	blood vessel
18	chr9:116468000-116469200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr9:116468200-116468800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:116468200-116468800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr9:116468200-116469000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:116468200-116469000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:116468200-116469000	Enhancers	Fetal Lung	lung
24	chr9:116468400-116468600	Flanking Active TSS	Liver	Liver
25	chr9:116468400-116471000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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