Variant report

Variant	rs877838
Chromosome Location	chr9:116470634-116470635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10513208	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11999448	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16908123	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16908169	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16908217	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56947995	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59429434	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60592547	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61521965	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035387	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73546487	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73655883	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv466513	chr9:116444269-116472236	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv615221	chr9:116444269-116472236	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116468400-116471000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:116468600-116474000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:116468600-116477200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:116468800-116471200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:116469000-116474000	Weak transcription	Gastric	stomach
6	chr9:116470000-116471200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr9:116470000-116471400	Enhancers	Fetal Muscle Leg	muscle
8	chr9:116470200-116470800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:116470200-116470800	ZNF genes & repeats	Esophagus	oesophagus
10	chr9:116470200-116471200	Enhancers	Pancreas	Pancrea
11	chr9:116470400-116470800	Flanking Active TSS	Liver	Liver
12	chr9:116470400-116471800	Enhancers	HepG2	liver
13	chr9:116470400-116473800	Weak transcription	Aorta	Aorta
14	chr9:116470400-116474000	Weak transcription	Fetal Lung	lung
15	chr9:116470600-116471000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:116470600-116471400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:116470600-116474000	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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