Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90783798..90785591-chr5:90786884..90789599,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10514347	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10805875	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1133120	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16869743	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16869748	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16869750	0.92[ASN][1000 genomes]
rs16869788	0.92[EUR][1000 genomes]
rs16876866	0.89[EUR][1000 genomes]
rs16878935	0.88[CEU][hapmap]
rs1807945	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.81[ASN][1000 genomes]
rs2303130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4146346	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56752631	0.89[EUR][1000 genomes]
rs6452955	0.92[EUR][1000 genomes]
rs73771404	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73771421	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73771425	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73771441	0.92[EUR][1000 genomes]
rs73771443	0.88[EUR][1000 genomes]
rs73773371	0.81[ASN][1000 genomes]
rs73773374	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73773378	0.83[ASN][1000 genomes]
rs9918274	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1030453	chr5:90709080-90849693	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3414088	chr5:90744553-90861592	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90787600-90790400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:90788000-90789200	Enhancers	GM12878-XiMat	blood
3	chr5:90788200-90789200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr5:90788200-90789200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr5:90788400-90789200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr5:90788600-90789200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:90788600-90789200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:90788600-90789200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:90788800-90789200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:90788800-90789200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:90789000-90789200	Enhancers	Aorta	Aorta

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