Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90783798..90785591-chr5:90786884..90789599,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10514348	0.89[EUR][1000 genomes]
rs10805875	0.89[EUR][1000 genomes]
rs1133120	0.81[EUR][1000 genomes]
rs16869748	0.86[EUR][1000 genomes]
rs16869750	0.89[EUR][1000 genomes]
rs16869788	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16878935	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs1807945	0.97[EUR][1000 genomes]
rs2287875	0.88[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs2303130	0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs4146346	1.00[EUR][1000 genomes]
rs56752631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6452955	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73771404	0.81[EUR][1000 genomes]
rs73771421	0.86[EUR][1000 genomes]
rs73771425	0.86[EUR][1000 genomes]
rs73771441	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73771443	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73773371	0.81[EUR][1000 genomes]
rs73773374	0.81[EUR][1000 genomes]
rs73773378	0.81[EUR][1000 genomes]
rs9918274	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1030453	chr5:90709080-90849693	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3414088	chr5:90744553-90861592	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90787000-90787600	Enhancers	GM12878-XiMat	blood
2	chr5:90787400-90787600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr5:90787400-90788400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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