Variant report

Variant	rs10514364
Chromosome Location	chr5:92299181-92299182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10463223	0.81[EUR][1000 genomes]
rs12054859	0.81[EUR][1000 genomes]
rs17082757	0.95[EUR][1000 genomes]
rs17082799	0.85[EUR][1000 genomes]
rs17082810	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs60593995	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92298000-92299200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:92298200-92299400	Enhancers	Brain Germinal Matrix	brain
3	chr5:92298400-92299600	Enhancers	Fetal Lung	lung
4	chr5:92298600-92299200	Enhancers	Brain Angular Gyrus	brain
5	chr5:92298600-92299200	Enhancers	Brain Hippocampus Middle	brain
6	chr5:92298600-92299200	Enhancers	HepG2	liver
7	chr5:92298600-92299400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:92299000-92299400	Enhancers	Brain Substantia Nigra	brain
9	chr5:92299000-92299800	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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