Variant report

Variant	rs10514753
Chromosome Location	chr3:110133584-110133585
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110127793..110130696-chr3:110131755..110134003,2	K562	blood:
2	chr3:110129196..110131425-chr3:110132503..110134599,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10514754	0.89[ASN][1000 genomes]
rs11915080	0.89[ASN][1000 genomes]
rs11915108	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919123	0.89[ASN][1000 genomes]
rs11919536	0.89[ASN][1000 genomes]
rs11919579	0.89[ASN][1000 genomes]
rs11919615	0.89[ASN][1000 genomes]
rs11922433	0.89[ASN][1000 genomes]
rs11925529	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061432	0.85[AFR][1000 genomes]
rs13062229	0.89[ASN][1000 genomes]
rs13063077	0.89[ASN][1000 genomes]
rs13075461	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080088	0.89[ASN][1000 genomes]
rs13095646	0.89[ASN][1000 genomes]
rs16856944	0.89[ASN][1000 genomes]
rs1996052	0.89[ASN][1000 genomes]
rs1996053	0.89[ASN][1000 genomes]
rs34104162	0.89[ASN][1000 genomes]
rs34288358	0.89[ASN][1000 genomes]
rs34340792	1.00[ASN][1000 genomes]
rs34652852	0.89[ASN][1000 genomes]
rs34702786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34943932	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35007067	0.89[ASN][1000 genomes]
rs35132287	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35332363	0.89[ASN][1000 genomes]
rs35548506	0.89[ASN][1000 genomes]
rs35762671	0.89[ASN][1000 genomes]
rs35904317	0.89[ASN][1000 genomes]
rs36050184	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407426	0.89[ASN][1000 genomes]
rs4682580	0.89[ASN][1000 genomes]
rs66518905	0.89[ASN][1000 genomes]
rs66529854	0.89[ASN][1000 genomes]
rs66709783	0.89[ASN][1000 genomes]
rs67334734	0.89[ASN][1000 genomes]
rs67698429	0.89[ASN][1000 genomes]
rs6772187	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67852605	0.89[ASN][1000 genomes]
rs6795390	0.89[ASN][1000 genomes]
rs68033873	0.89[ASN][1000 genomes]
rs71323141	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73209573	0.89[ASN][1000 genomes]
rs9682155	0.89[ASN][1000 genomes]
rs9842486	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877336	chr3:110083045-110143891	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110130200-110134800	Enhancers	NHDF-Ad	bronchial
2	chr3:110131400-110135000	Enhancers	HUVEC	blood vessel
3	chr3:110131800-110134800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:110132000-110134400	Enhancers	HMEC	breast
5	chr3:110132200-110134400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:110132200-110134400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:110132200-110134400	Enhancers	Liver	Liver
8	chr3:110132200-110134400	Enhancers	Hela-S3	cervix
9	chr3:110132200-110134400	Enhancers	NHLF	lung
10	chr3:110132200-110134800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:110132200-110134800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:110132200-110134800	Enhancers	HSMM	muscle
13	chr3:110132200-110134800	Enhancers	NHEK	skin
14	chr3:110132400-110134000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:110132400-110134400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:110132400-110134800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:110132600-110133600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:110132600-110133800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:110132600-110133800	Weak transcription	HSMMtube	muscle
20	chr3:110132600-110138000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:110133000-110134400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:110133200-110134400	Enhancers	Osteobl	bone
23	chr3:110133200-110134600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:110133200-110134600	Enhancers	NH-A	brain
25	chr3:110133200-110134800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:110133200-110138600	Weak transcription	Adipose Nuclei	Adipose
27	chr3:110133200-110139200	Weak transcription	Ovary	ovary
28	chr3:110133200-110141600	Weak transcription	Aorta	Aorta
29	chr3:110133400-110133800	Enhancers	A549	lung
30	chr3:110133400-110134400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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