Variant report

Variant	rs35132287
Chromosome Location	chr3:110104657-110104658
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110102631..110105369-chr3:110107761..110109914,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10514753	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514754	0.89[ASN][1000 genomes]
rs11915080	0.89[ASN][1000 genomes]
rs11915108	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919123	0.89[ASN][1000 genomes]
rs11919536	0.89[ASN][1000 genomes]
rs11919579	0.89[ASN][1000 genomes]
rs11919615	0.89[ASN][1000 genomes]
rs11922433	0.89[ASN][1000 genomes]
rs11925529	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062229	0.89[ASN][1000 genomes]
rs13063077	0.89[ASN][1000 genomes]
rs13075461	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080088	0.89[ASN][1000 genomes]
rs13095646	0.89[ASN][1000 genomes]
rs16856944	0.89[ASN][1000 genomes]
rs1996052	0.89[ASN][1000 genomes]
rs1996053	0.89[ASN][1000 genomes]
rs34104162	0.89[ASN][1000 genomes]
rs34288358	0.89[ASN][1000 genomes]
rs34340792	1.00[ASN][1000 genomes]
rs34652852	0.89[ASN][1000 genomes]
rs34702786	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34943932	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35007067	0.89[ASN][1000 genomes]
rs35332363	0.89[ASN][1000 genomes]
rs35548506	0.89[ASN][1000 genomes]
rs35762671	0.89[ASN][1000 genomes]
rs35904317	0.89[ASN][1000 genomes]
rs36050184	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407426	0.89[ASN][1000 genomes]
rs4682580	0.89[ASN][1000 genomes]
rs66518905	0.89[ASN][1000 genomes]
rs66529854	0.89[ASN][1000 genomes]
rs66709783	0.89[ASN][1000 genomes]
rs67334734	0.89[ASN][1000 genomes]
rs67698429	0.89[ASN][1000 genomes]
rs6772187	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67852605	0.89[ASN][1000 genomes]
rs6795390	0.89[ASN][1000 genomes]
rs68033873	0.89[ASN][1000 genomes]
rs71323141	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73209573	0.89[ASN][1000 genomes]
rs9682155	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877336	chr3:110083045-110143891	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110101400-110110600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:110102600-110105400	Enhancers	Hela-S3	cervix
3	chr3:110103000-110105200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:110103800-110110000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links