Variant report

Variant	rs66529854
Chromosome Location	chr3:110213842-110213843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1028025	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10514753	0.89[ASN][1000 genomes]
rs10514754	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934048	0.98[EUR][1000 genomes]
rs11915080	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915108	0.89[ASN][1000 genomes]
rs11918532	0.96[EUR][1000 genomes]
rs11919123	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919536	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919579	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919615	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919803	0.98[EUR][1000 genomes]
rs11921362	0.98[EUR][1000 genomes]
rs11922433	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923318	0.83[EUR][1000 genomes]
rs11925529	0.89[ASN][1000 genomes]
rs11925811	0.98[EUR][1000 genomes]
rs11927048	0.98[EUR][1000 genomes]
rs13059626	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs13062229	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13063077	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065299	0.98[EUR][1000 genomes]
rs13068784	0.95[EUR][1000 genomes]
rs13069168	0.98[EUR][1000 genomes]
rs13075461	0.89[ASN][1000 genomes]
rs13080088	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080532	0.98[EUR][1000 genomes]
rs13084975	0.98[EUR][1000 genomes]
rs13085116	0.96[EUR][1000 genomes]
rs13085149	0.96[EUR][1000 genomes]
rs13085426	0.98[EUR][1000 genomes]
rs13085783	0.98[EUR][1000 genomes]
rs13091019	0.98[EUR][1000 genomes]
rs13095646	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099280	0.98[EUR][1000 genomes]
rs1512516	0.98[EUR][1000 genomes]
rs1588653	0.98[EUR][1000 genomes]
rs16856944	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996037	0.94[EUR][1000 genomes]
rs1996052	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996053	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34104162	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34143006	0.98[EUR][1000 genomes]
rs34285697	0.98[EUR][1000 genomes]
rs34288358	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34312493	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs34323078	0.98[EUR][1000 genomes]
rs34340792	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34350005	0.95[EUR][1000 genomes]
rs34364119	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs34478334	0.96[EUR][1000 genomes]
rs34652852	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34702786	0.89[ASN][1000 genomes]
rs34943932	0.89[ASN][1000 genomes]
rs34956311	0.95[EUR][1000 genomes]
rs35007067	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35083997	0.96[EUR][1000 genomes]
rs35129668	0.98[EUR][1000 genomes]
rs35132287	0.89[ASN][1000 genomes]
rs35232786	0.98[EUR][1000 genomes]
rs35293706	0.96[EUR][1000 genomes]
rs35332363	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35342735	0.98[EUR][1000 genomes]
rs35480782	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs35548506	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35762671	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35793959	0.94[EUR][1000 genomes]
rs35904317	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36050184	0.89[ASN][1000 genomes]
rs36094191	0.98[EUR][1000 genomes]
rs3914231	0.98[EUR][1000 genomes]
rs3920228	0.89[EUR][1000 genomes]
rs4407426	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682580	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66518905	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66536849	0.98[EUR][1000 genomes]
rs66709783	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67334734	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763158	0.98[EUR][1000 genomes]
rs67698429	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772187	0.89[ASN][1000 genomes]
rs6774121	0.98[EUR][1000 genomes]
rs67852605	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793227	0.95[EUR][1000 genomes]
rs6795390	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798115	0.98[EUR][1000 genomes]
rs68033873	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809686	0.98[EUR][1000 genomes]
rs71323141	0.89[ASN][1000 genomes]
rs73209573	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682155	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841439	0.98[EUR][1000 genomes]
rs9872145	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110212400-110214000	Enhancers	Fetal Brain Male	brain
2	chr3:110213000-110214000	Weak transcription	Fetal Intestine Large	intestine
3	chr3:110213800-110214400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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