Variant report

Variant	rs11923318
Chromosome Location	chr3:110293817-110293818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1028025	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514754	0.83[EUR][1000 genomes]
rs10934048	0.86[EUR][1000 genomes]
rs11915080	0.90[EUR][1000 genomes]
rs11918532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919536	0.80[EUR][1000 genomes]
rs11919579	0.81[EUR][1000 genomes]
rs11919615	0.81[EUR][1000 genomes]
rs11919803	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11922433	0.84[EUR][1000 genomes]
rs11925811	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927048	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13059626	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062229	0.81[EUR][1000 genomes]
rs13063077	0.84[EUR][1000 genomes]
rs13065299	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068784	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069168	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080088	0.83[EUR][1000 genomes]
rs13080532	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084975	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085116	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085149	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085426	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085783	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs13091019	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095646	0.81[EUR][1000 genomes]
rs13099280	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398346	0.92[CEU][hapmap]
rs1512516	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1588653	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856944	0.81[EUR][1000 genomes]
rs1996037	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996038	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996052	0.83[EUR][1000 genomes]
rs1996053	0.83[EUR][1000 genomes]
rs34104162	0.81[EUR][1000 genomes]
rs34143006	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34285697	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34288358	0.81[EUR][1000 genomes]
rs34312493	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34323078	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34340792	0.81[EUR][1000 genomes]
rs34350005	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34364119	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34478334	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652852	0.90[EUR][1000 genomes]
rs34956311	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35007067	0.81[EUR][1000 genomes]
rs35083997	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35129668	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35232786	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35293706	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35332363	0.81[EUR][1000 genomes]
rs35342735	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35480782	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35548506	0.83[EUR][1000 genomes]
rs35762671	0.81[EUR][1000 genomes]
rs35793959	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35904317	0.81[EUR][1000 genomes]
rs36094191	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3914231	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407426	0.80[EUR][1000 genomes]
rs4682580	0.80[EUR][1000 genomes]
rs66518905	0.83[EUR][1000 genomes]
rs66529854	0.83[EUR][1000 genomes]
rs66536849	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66709783	0.83[EUR][1000 genomes]
rs67334734	0.81[EUR][1000 genomes]
rs67527932	1.00[ASN][1000 genomes]
rs6763158	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67698429	0.83[EUR][1000 genomes]
rs6774121	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67852605	0.81[EUR][1000 genomes]
rs6793227	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795390	0.84[EUR][1000 genomes]
rs6798115	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68033873	0.81[EUR][1000 genomes]
rs6809686	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73209573	0.81[EUR][1000 genomes]
rs73213221	1.00[ASN][1000 genomes]
rs7623917	1.00[ASN][1000 genomes]
rs7634957	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682155	0.83[EUR][1000 genomes]
rs9841439	0.86[EUR][1000 genomes]
rs9872145	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv460820	chr3:110283716-110321035	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv591274	chr3:110283716-110321035	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110287600-110295400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:110288200-110294400	Weak transcription	NHDF-Ad	bronchial
3	chr3:110288200-110294600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:110290400-110295400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:110293400-110301600	Weak transcription	Dnd41	blood
6	chr3:110293600-110294600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:110293600-110295800	Enhancers	A549	lung

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