Variant report

Variant	rs7634957
Chromosome Location	chr3:110297043-110297044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1028025	1.00[ASN][1000 genomes]
rs11915080	0.81[EUR][1000 genomes]
rs11918532	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11919803	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11921362	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11923318	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11925811	1.00[ASN][1000 genomes]
rs11927048	1.00[ASN][1000 genomes]
rs13059626	1.00[ASN][1000 genomes]
rs13065299	1.00[ASN][1000 genomes]
rs13068784	1.00[ASN][1000 genomes]
rs13069168	1.00[ASN][1000 genomes]
rs13080532	1.00[ASN][1000 genomes]
rs13084975	1.00[ASN][1000 genomes]
rs13085116	1.00[ASN][1000 genomes]
rs13085149	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13085426	1.00[ASN][1000 genomes]
rs13085783	1.00[CEU][hapmap]
rs13091019	1.00[ASN][1000 genomes]
rs13099280	1.00[ASN][1000 genomes]
rs1398346	0.89[CEU][hapmap]
rs1512516	1.00[CEU][hapmap]
rs1588653	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1996037	1.00[ASN][1000 genomes]
rs1996038	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34143006	1.00[ASN][1000 genomes]
rs34285697	1.00[ASN][1000 genomes]
rs34312493	1.00[ASN][1000 genomes]
rs34323078	1.00[ASN][1000 genomes]
rs34350005	1.00[ASN][1000 genomes]
rs34364119	1.00[ASN][1000 genomes]
rs34478334	1.00[ASN][1000 genomes]
rs34652852	0.81[EUR][1000 genomes]
rs34956311	1.00[ASN][1000 genomes]
rs35083997	1.00[ASN][1000 genomes]
rs35129668	1.00[ASN][1000 genomes]
rs35232786	1.00[ASN][1000 genomes]
rs35293706	1.00[ASN][1000 genomes]
rs35342735	1.00[ASN][1000 genomes]
rs35480782	0.82[ASN][1000 genomes]
rs35793959	1.00[ASN][1000 genomes]
rs36094191	1.00[ASN][1000 genomes]
rs3914231	1.00[ASN][1000 genomes]
rs66536849	1.00[ASN][1000 genomes]
rs67527932	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763158	1.00[ASN][1000 genomes]
rs6774121	1.00[ASN][1000 genomes]
rs6793227	1.00[ASN][1000 genomes]
rs6798115	1.00[ASN][1000 genomes]
rs6809686	1.00[ASN][1000 genomes]
rs73213221	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623917	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv460820	chr3:110283716-110321035	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv591274	chr3:110283716-110321035	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1007612	chr3:110296571-110310664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1007973	chr3:110296571-110313934	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110293400-110301600	Weak transcription	Dnd41	blood
2	chr3:110294400-110298600	Enhancers	NHDF-Ad	bronchial
3	chr3:110294600-110297200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:110294600-110299000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:110294600-110299400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:110294600-110299800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:110294800-110297400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:110294800-110297400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:110294800-110297400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:110294800-110299400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:110295400-110297200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:110295400-110297200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:110295400-110297400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:110295400-110297400	Enhancers	Osteobl	bone
15	chr3:110295400-110299400	Enhancers	HSMM	muscle
16	chr3:110295800-110297600	Enhancers	NHLF	lung
17	chr3:110296000-110297200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr3:110296000-110297200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:110296000-110299400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:110296200-110297200	Enhancers	A549	lung
21	chr3:110296200-110298400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:110296400-110297200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:110296400-110297800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr3:110296400-110299400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr3:110296600-110297600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:110296600-110297800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:110296600-110298200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:110296600-110298600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:110296600-110298600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:110296600-110298800	Weak transcription	HMEC	breast
31	chr3:110296800-110297200	Weak transcription	NH-A	brain
32	chr3:110296800-110301600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:110297000-110298200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:110297000-110298400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:110297000-110302600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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