Variant report

Variant	rs1996038
Chromosome Location	chr3:110290490-110290491
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1028025	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934048	0.81[EUR][1000 genomes]
rs11915080	0.95[EUR][1000 genomes]
rs11918532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923318	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11925811	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927048	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13059626	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065299	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068784	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069168	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080532	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084975	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085116	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085149	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085426	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs13091019	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099280	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1398346	0.92[CEU][hapmap];0.82[TSI][hapmap]
rs1512516	1.00[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs1588653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996037	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34143006	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34285697	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34312493	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34323078	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34350005	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34364119	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34478334	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652852	0.95[EUR][1000 genomes]
rs34956311	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35083997	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35129668	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35232786	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35293706	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35342735	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35480782	0.82[ASN][1000 genomes]
rs35793959	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36094191	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3914231	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66536849	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67527932	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763158	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774121	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793227	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798115	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809686	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213221	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623917	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634957	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841439	0.81[EUR][1000 genomes]
rs9872145	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv460820	chr3:110283716-110321035	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv591274	chr3:110283716-110321035	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3444024	chr3:110288612-110293210	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110287600-110295400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:110288200-110294400	Weak transcription	NHDF-Ad	bronchial
3	chr3:110288200-110294600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:110290400-110295400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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