Variant report

Variant	rs73213221
Chromosome Location	chr3:110224103-110224104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:110222894..110225675-chr3:110240158..110242098,2	K562	blood:
2	chr3:110223100..110226514-chr3:110228942..110230704,3	K562	blood:
3	chr3:110223795..110225407-chr3:110236340..110238461,2	K562	blood:
4	chr3:110223081..110225312-chr3:110255969..110257984,2	K562	blood:
5	chr3:110195963..110198828-chr3:110223194..110225023,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1028025	1.00[ASN][1000 genomes]
rs11915080	0.84[EUR][1000 genomes]
rs11918532	1.00[ASN][1000 genomes]
rs11919803	1.00[ASN][1000 genomes]
rs11921362	1.00[ASN][1000 genomes]
rs11923318	1.00[ASN][1000 genomes]
rs11925811	1.00[ASN][1000 genomes]
rs11927048	1.00[ASN][1000 genomes]
rs13059626	1.00[ASN][1000 genomes]
rs13065299	1.00[ASN][1000 genomes]
rs13068784	1.00[ASN][1000 genomes]
rs13069168	1.00[ASN][1000 genomes]
rs13080532	1.00[ASN][1000 genomes]
rs13084975	1.00[ASN][1000 genomes]
rs13085116	1.00[ASN][1000 genomes]
rs13085149	1.00[ASN][1000 genomes]
rs13085426	1.00[ASN][1000 genomes]
rs13091019	1.00[ASN][1000 genomes]
rs13099280	1.00[ASN][1000 genomes]
rs1588653	1.00[ASN][1000 genomes]
rs1996037	1.00[ASN][1000 genomes]
rs1996038	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34143006	1.00[ASN][1000 genomes]
rs34285697	1.00[ASN][1000 genomes]
rs34312493	1.00[ASN][1000 genomes]
rs34323078	1.00[ASN][1000 genomes]
rs34350005	1.00[ASN][1000 genomes]
rs34364119	1.00[ASN][1000 genomes]
rs34478334	1.00[ASN][1000 genomes]
rs34652852	0.84[EUR][1000 genomes]
rs34956311	1.00[ASN][1000 genomes]
rs35083997	1.00[ASN][1000 genomes]
rs35129668	1.00[ASN][1000 genomes]
rs35232786	1.00[ASN][1000 genomes]
rs35293706	1.00[ASN][1000 genomes]
rs35342735	1.00[ASN][1000 genomes]
rs35480782	0.82[ASN][1000 genomes]
rs35793959	1.00[ASN][1000 genomes]
rs36094191	1.00[ASN][1000 genomes]
rs3914231	1.00[ASN][1000 genomes]
rs66536849	1.00[ASN][1000 genomes]
rs67527932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763158	1.00[ASN][1000 genomes]
rs6774121	1.00[ASN][1000 genomes]
rs6793227	1.00[ASN][1000 genomes]
rs6798115	1.00[ASN][1000 genomes]
rs6809686	1.00[ASN][1000 genomes]
rs7623917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634957	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829670	chr3:110134650-110308256	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520365	chr3:110155172-110441165	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1001144	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536687	chr3:110158316-110431113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv829672	chr3:110206693-110361632	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110223800-110226000	Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links