Variant report

Variant	rs10515250
Chromosome Location	chr5:96150193-96150194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96142184..96145543-chr5:96149000..96152953,5	MCF-7	breast:
2	chr5:96141125..96147304-chr5:96147498..96153496,14	K562	blood:

Variant related genes	Relation type
ENSG00000164307	Chromatin interaction
ENSG00000272109	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10515246	1.00[AFR][1000 genomes]
rs10515247	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10515248	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10515249	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11135480	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11738115	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11738810	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11739020	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11740375	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11740598	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11741100	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11742261	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11743410	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11745157	0.87[EUR][1000 genomes]
rs11746534	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11747148	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11747179	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11747896	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11748328	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11748519	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11748795	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11749811	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11750283	0.83[EUR][1000 genomes]
rs11750464	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11750671	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11750934	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12186366	1.00[AFR][1000 genomes]
rs13601	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17401901	1.00[AFR][1000 genomes]
rs17402639	1.00[AFR][1000 genomes]
rs17402704	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17405676	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17481334	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17481759	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17481856	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17484359	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2042386	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3213809	0.87[EUR][1000 genomes]
rs3333	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3334	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3335	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35898772	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3797805	0.87[EUR][1000 genomes]
rs55773007	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55996659	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56119802	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56213813	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56319744	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56325109	0.80[AMR][1000 genomes]
rs56395748	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72773905	1.00[AFR][1000 genomes]
rs72773906	1.00[AFR][1000 genomes]
rs72773912	1.00[AFR][1000 genomes]
rs72773917	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72773922	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72773923	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72773932	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72773942	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72773947	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72773950	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72773968	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72773969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72773981	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72773986	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72773989	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72773991	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72775807	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72775809	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72775817	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72775818	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015173	chr5:95987366-96153392	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv830411	chr5:96045168-96187817	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv516293	chr5:96070205-96216387	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1027472	chr5:96081592-96337550	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv598963	chr5:96084776-96363407	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv432756	chr5:96113844-96234644	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	nsv531967	chr5:96127842-96302702	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96144400-96151600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:96144400-96152000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:96144600-96151200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:96144600-96151800	Enhancers	Primary T cells from cord blood	blood
5	chr5:96144600-96151800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:96144600-96152200	Weak transcription	Colonic Mucosa	Colon
7	chr5:96144600-96152800	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:96144600-96152800	Weak transcription	Osteobl	bone
9	chr5:96144600-96156600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:96144800-96151600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr5:96144800-96151600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:96144800-96152200	Weak transcription	Placenta	Placenta
13	chr5:96145600-96151800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr5:96146200-96151800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:96147600-96150200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:96147600-96152800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:96147800-96152200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:96149000-96152000	Weak transcription	K562	blood
19	chr5:96149000-96152400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:96149600-96151600	Enhancers	Dnd41	blood
21	chr5:96149600-96151800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:96149600-96152200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr5:96149800-96150200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:96149800-96150400	Enhancers	Fetal Intestine Large	intestine
25	chr5:96149800-96151600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr5:96149800-96151600	Enhancers	Thymus	Thymus
27	chr5:96149800-96151800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr5:96149800-96151800	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr5:96149800-96152000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr5:96149800-96152000	Enhancers	Fetal Thymus	thymus
31	chr5:96150000-96152000	Weak transcription	Fetal Intestine Small	intestine
32	chr5:96150000-96152000	Weak transcription	NHEK	skin
33	chr5:96150000-96153400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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