Variant report

Variant	rs72775817
Chromosome Location	chr5:96190709-96190710
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:96188005..96191369-chr5:96193266..96198174,6	K562	blood:
2	chr5:96185451..96187318-chr5:96190686..96192448,2	K562	blood:
3	chr5:96189537..96191977-chr5:96384132..96387078,2	K562	blood:
4	chr5:96187112..96188825-chr5:96189187..96193185,3	MCF-7	breast:
5	chr5:96184835..96188350-chr5:96188739..96192448,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10515246	1.00[AFR][1000 genomes]
rs10515247	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10515248	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10515249	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10515250	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11135480	1.00[AFR][1000 genomes]
rs11738115	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11738810	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11739020	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11740375	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11740598	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11741100	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11742261	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11743410	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11746534	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11747148	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11747179	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11747896	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11748328	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11748519	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11748795	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11749811	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11750464	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11750671	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11750934	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12186366	1.00[AFR][1000 genomes]
rs13601	1.00[AFR][1000 genomes]
rs17401901	1.00[AFR][1000 genomes]
rs17402639	1.00[AFR][1000 genomes]
rs17402704	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17405676	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17481334	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17481759	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17481856	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17484359	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2042386	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3333	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3334	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3335	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35898772	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55773007	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs55996659	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs56119802	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs56319744	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs56395748	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72773905	1.00[AFR][1000 genomes]
rs72773906	1.00[AFR][1000 genomes]
rs72773912	1.00[AFR][1000 genomes]
rs72773917	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72773922	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72773923	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72773932	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72773942	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72773947	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72773950	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72773968	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72773969	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72773981	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs72773986	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs72773989	0.95[EUR][1000 genomes]
rs72773991	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72775807	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72775809	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72775818	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv516293	chr5:96070205-96216387	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1027472	chr5:96081592-96337550	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv598963	chr5:96084776-96363407	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
9	nsv432756	chr5:96113844-96234644	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv531967	chr5:96127842-96302702	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96187000-96190800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:96188400-96191000	Enhancers	Osteobl	bone
3	chr5:96188800-96193000	Enhancers	Fetal Intestine Small	intestine
4	chr5:96188800-96194400	Enhancers	Adipose Nuclei	Adipose
5	chr5:96189000-96190800	Weak transcription	HSMMtube	muscle
6	chr5:96189000-96191200	Weak transcription	HSMM	muscle
7	chr5:96189000-96191200	Weak transcription	NH-A	brain
8	chr5:96189000-96191400	Weak transcription	Fetal Brain Male	brain
9	chr5:96189200-96191000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr5:96189800-96196400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:96190000-96191800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:96190200-96191000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:96190200-96191600	Enhancers	NHLF	lung
14	chr5:96190400-96190800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:96190400-96191000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr5:96190400-96191200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr5:96190400-96191200	Enhancers	Liver	Liver
18	chr5:96190600-96190800	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr5:96190600-96191600	Weak transcription	Fetal Intestine Large	intestine
20	chr5:96190600-96191800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:96190600-96192400	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links