Variant report

Variant	rs11746534
Chromosome Location	chr5:96124807-96124808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:96124505-96124837	GM12878	blood:	n/a	n/a
2	POLR2A	chr5:96124110-96124908	U87	brain:	n/a	n/a
3	POLR2A	chr5:96124111-96124811	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr5:96124387-96124825	PANC-1	pancreas:	n/a	n/a
5	POLR2A	chr5:96123725-96127973	A549	lung:	n/a	n/a
6	POLR2A	chr5:96123773-96124986	U87	brain:	n/a	n/a
7	POLR2A	chr5:96124061-96124877	K562	blood:	n/a	n/a
8	BCL3	chr5:96124062-96124906	A549	lung:	n/a	chr5:96124851-96124859
9	POLR2A	chr5:96124110-96124854	U87	brain:	n/a	n/a
10	POLR2A	chr5:96123657-96124820	HepG2	liver:	n/a	n/a
11	POLR2A	chr5:96123740-96124991	U87	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:96118389..96123506-chr5:96124152..96130865,8	K562	blood:
2	chr5:96119292..96124832-chr5:96125807..96130865,7	K562	blood:
3	chr5:96124139..96126191-chr5:96133703..96135784,2	K562	blood:
4	chr5:96122964..96125889-chr5:96127442..96130664,3	MCF-7	breast:
5	chr5:96122962..96125249-chr5:96269601..96272549,2	MCF-7	breast:

No data

Variant related genes	Relation type
ERAP1	TF binding region
ENSG00000247121	Chromatin interaction
ENSG00000113441	Chromatin interaction
ENSG00000164307	Chromatin interaction
ENSG00000248734	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10515246	1.00[AFR][1000 genomes]
rs10515247	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10515248	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10515249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10515250	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11135480	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11738115	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11738810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11739020	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11740375	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11740598	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11741100	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11742261	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11743410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11745157	0.89[EUR][1000 genomes]
rs11747148	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11747179	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11747896	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11748328	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11748519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11748795	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11749811	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11750283	0.85[EUR][1000 genomes]
rs11750464	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11750671	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11750934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12186366	1.00[AFR][1000 genomes]
rs13601	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17401901	1.00[AFR][1000 genomes]
rs17402639	1.00[AFR][1000 genomes]
rs17402704	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17405676	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17481334	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17481759	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17481856	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17484359	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2042386	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3213809	0.89[EUR][1000 genomes]
rs3333	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3334	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3335	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35898772	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3797805	0.89[EUR][1000 genomes]
rs55773007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55996659	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56119802	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56213813	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56319744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56325109	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56395748	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72773905	1.00[AFR][1000 genomes]
rs72773906	1.00[AFR][1000 genomes]
rs72773912	1.00[AFR][1000 genomes]
rs72773917	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72773922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72773923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72773932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72773942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72773947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72773950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72773968	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72773969	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72773981	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72773986	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72773989	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72773991	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72775807	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72775809	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72775817	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72775818	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015173	chr5:95987366-96153392	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv830411	chr5:96045168-96187817	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv516293	chr5:96070205-96216387	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1027472	chr5:96081592-96337550	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv598963	chr5:96084776-96363407	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv432756	chr5:96113844-96234644	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96063000-96126200	Weak transcription	Brain Germinal Matrix	brain
2	chr5:96068400-96138200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr5:96068600-96130000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:96071400-96126600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:96079400-96126600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr5:96079600-96126400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:96079600-96126600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:96079600-96126600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr5:96089200-96137000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:96092800-96126600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:96097400-96130000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr5:96097400-96131800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:96097400-96138400	Strong transcription	Primary B cells from peripheral blood	blood
14	chr5:96097800-96126600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:96097800-96131800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:96098000-96129600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr5:96098000-96137000	Strong transcription	Fetal Lung	lung
18	chr5:96098000-96137600	Strong transcription	Fetal Thymus	thymus
19	chr5:96098200-96128000	Strong transcription	Primary hematopoietic stem cells	blood
20	chr5:96100200-96127000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr5:96104200-96136400	Strong transcription	Dnd41	blood
22	chr5:96104800-96126600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr5:96105000-96127800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr5:96107600-96129600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr5:96107800-96138200	Strong transcription	GM12878-XiMat	blood
26	chr5:96108000-96129600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:96110200-96130200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
28	chr5:96110400-96125600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:96110600-96130400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr5:96111600-96126800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:96113800-96137200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr5:96114000-96126400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:96114600-96131000	Weak transcription	Fetal Brain Male	brain
34	chr5:96114800-96126400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr5:96114800-96131200	Weak transcription	Right Ventricle	heart
36	chr5:96115200-96141200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:96115400-96142000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr5:96116000-96126400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:96116000-96126600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr5:96116200-96141600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr5:96117000-96126600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:96117200-96126400	Weak transcription	HSMMtube	muscle
43	chr5:96117400-96126200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr5:96117400-96137000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr5:96117600-96131800	Strong transcription	Liver	Liver
46	chr5:96118600-96126400	Strong transcription	Duodenum Mucosa	Duodenum
47	chr5:96118600-96126800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr5:96118800-96126400	Strong transcription	Fetal Intestine Large	intestine
49	chr5:96118800-96126600	Weak transcription	NH-A	brain
50	chr5:96119000-96125400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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