Variant report

Variant	rs10515680
Chromosome Location	chr5:152424268-152424269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1123202	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12152961	1.00[ASN][1000 genomes]
rs12516389	1.00[ASN][1000 genomes]
rs12517903	1.00[ASN][1000 genomes]
rs12518081	1.00[ASN][1000 genomes]
rs12518199	1.00[ASN][1000 genomes]
rs13154170	1.00[ASN][1000 genomes]
rs13168691	1.00[ASN][1000 genomes]
rs1438935	0.96[EUR][1000 genomes]
rs17113912	0.84[EUR][1000 genomes]
rs17490495	0.94[EUR][1000 genomes]
rs17490523	0.96[EUR][1000 genomes]
rs17490621	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17490669	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17491791	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17493016	0.82[EUR][1000 genomes]
rs17493121	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494099	1.00[ASN][1000 genomes]
rs17576736	0.86[EUR][1000 genomes]
rs2349021	0.95[EUR][1000 genomes]
rs34033163	0.92[EUR][1000 genomes]
rs34244108	1.00[ASN][1000 genomes]
rs34316705	1.00[ASN][1000 genomes]
rs35029802	1.00[ASN][1000 genomes]
rs35708928	1.00[ASN][1000 genomes]
rs4958332	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4958603	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4958605	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60221066	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67942753	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6886088	0.86[EUR][1000 genomes]
rs6887416	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71588075	1.00[ASN][1000 genomes]
rs71588077	1.00[ASN][1000 genomes]
rs71588079	1.00[ASN][1000 genomes]
rs72804801	1.00[ASN][1000 genomes]
rs72808724	0.82[EUR][1000 genomes]
rs73284261	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284269	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284276	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284282	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284294	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284298	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7443245	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv600089	chr5:152200109-152488891	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017812	chr5:152220845-152467431	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv537928	chr5:152220845-152467431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv883050	chr5:152277537-152540026	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv949596	chr5:152343943-152548821	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152423200-152424600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:152423200-152424800	Enhancers	HMEC	breast
3	chr5:152423200-152424800	Enhancers	NHEK	skin
4	chr5:152423200-152425000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:152423800-152425000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:152423800-152425200	Enhancers	Placenta Amnion	Placenta Amnion

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