Variant report

Variant	rs10516407
Chromosome Location	chr4:21883570-21883571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10018691	0.83[CEU][hapmap]
rs10021133	0.88[CHB][hapmap]
rs1040039	0.88[CHB][hapmap]
rs10516398	0.88[CHB][hapmap]
rs10516400	0.88[CHB][hapmap]
rs10938860	0.88[CHB][hapmap]
rs11725029	0.88[CHB][hapmap]
rs11725634	0.88[CHB][hapmap]
rs11730531	0.86[CHB][hapmap]
rs11731835	0.88[CHB][hapmap]
rs11732527	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734604	0.88[CHB][hapmap]
rs11737531	0.88[CHB][hapmap]
rs11943445	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs11944162	0.88[CHB][hapmap]
rs12503772	0.88[CHB][hapmap]
rs13104527	0.88[CHB][hapmap]
rs13105122	0.88[CHB][hapmap]
rs13105154	0.88[CHB][hapmap]
rs13110177	0.85[ASN][1000 genomes]
rs13112610	0.86[CHB][hapmap]
rs13115987	0.88[CHB][hapmap]
rs13128189	0.88[CHB][hapmap]
rs13129819	0.88[CHB][hapmap]
rs13147352	0.88[CHB][hapmap]
rs1380271	0.88[CHB][hapmap]
rs1380272	0.88[CHB][hapmap]
rs1398835	0.88[CHB][hapmap]
rs1459280	0.88[CHB][hapmap]
rs1533279	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17496681	0.88[CHB][hapmap]
rs17496959	0.88[CHB][hapmap]
rs17497844	0.88[CHB][hapmap]
rs17497900	0.88[CHB][hapmap]
rs17498614	0.88[CHB][hapmap]
rs17561951	0.88[CHB][hapmap]
rs17563311	0.86[CHB][hapmap]
rs17563769	0.88[CHB][hapmap]
rs17563824	0.88[CHB][hapmap]
rs17564865	0.88[CHB][hapmap]
rs17566434	0.88[CHB][hapmap]
rs17570050	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17570140	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181718	0.88[CHB][hapmap]
rs1824368	0.88[CHB][hapmap]
rs1841188	0.88[CHB][hapmap]
rs1847426	0.88[CHB][hapmap]
rs1847427	0.88[CHB][hapmap]
rs184860	0.88[CHB][hapmap]
rs2044809	0.88[CHB][hapmap]
rs2137650	0.88[CHB][hapmap]
rs2175779	0.88[CHB][hapmap];0.81[CHD][hapmap]
rs2175780	0.86[CHB][hapmap]
rs2323128	0.88[CHB][hapmap]
rs34008037	0.85[ASN][1000 genomes]
rs35711081	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360697	0.88[CHB][hapmap]
rs4277766	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap]
rs4443267	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4631029	0.88[CHB][hapmap]
rs4697243	0.88[CHB][hapmap]
rs6448076	0.88[CHB][hapmap]
rs6448096	0.88[CHB][hapmap]
rs6823352	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6830224	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs6834778	0.88[CHB][hapmap]
rs6837235	0.83[ASN][1000 genomes]
rs6839725	1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap]
rs6839776	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap]
rs6852952	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs6853293	1.00[CHB][hapmap]
rs7661087	0.88[CHB][hapmap]
rs7684151	0.88[CHB][hapmap]
rs9884203	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21881200-21883800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:21881200-21886400	Weak transcription	Osteobl	bone
3	chr4:21882800-21884200	Weak transcription	HMEC	breast
4	chr4:21883200-21884400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:21883400-21884200	Enhancers	Muscle Satellite Cultured Cells	--

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