Variant report

Variant	rs12503772
Chromosome Location	chr4:21813510-21813511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10021133	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs10029040	0.90[ASN][1000 genomes]
rs1040039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10516398	1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs10516400	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516407	0.88[CHB][hapmap]
rs10805230	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10938854	0.97[ASN][1000 genomes]
rs10938860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11723231	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725029	1.00[CHB][hapmap]
rs11725506	0.82[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11725634	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11728958	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11730531	1.00[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs11731098	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11731835	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs11732527	0.85[CHB][hapmap]
rs11732993	0.80[CEU][hapmap]
rs11734604	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11736882	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11737531	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs11931923	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11932037	0.80[CEU][hapmap]
rs11938269	0.97[ASN][1000 genomes]
rs11943445	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs11944162	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];0.89[TSI][hapmap];0.90[ASN][1000 genomes]
rs12512545	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12512603	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13104527	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13105122	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13105154	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs13110177	0.86[ASN][1000 genomes]
rs13112610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13115987	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs13119994	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128189	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13129819	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13132296	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13135188	0.97[ASN][1000 genomes]
rs13135698	0.97[ASN][1000 genomes]
rs13141904	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13142511	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13143578	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13146273	0.90[ASN][1000 genomes]
rs13147352	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs1380271	1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.90[ASN][1000 genomes]
rs1380272	1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[JPT][hapmap];0.83[TSI][hapmap];0.90[ASN][1000 genomes]
rs1398835	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1459279	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459280	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs168626	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17496681	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs17496959	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs17497844	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs17497900	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs17498614	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs17561951	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs17563311	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17563769	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs17563824	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs17564865	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs17566434	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17570050	0.88[CHB][hapmap]
rs17570140	0.86[CHB][hapmap]
rs181718	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1824368	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs1841187	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1841188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1847426	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1847427	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs184860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2044809	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2137650	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175779	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2175780	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2323128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34008037	0.86[ASN][1000 genomes]
rs34099045	0.90[ASN][1000 genomes]
rs34375823	0.97[ASN][1000 genomes]
rs34708714	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34839938	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34945659	0.90[ASN][1000 genomes]
rs35146316	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35161937	0.97[ASN][1000 genomes]
rs35175333	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35215732	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35489277	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35719625	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35733545	0.97[ASN][1000 genomes]
rs35827665	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35842590	0.90[ASN][1000 genomes]
rs35921228	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35937671	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs360698	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4455402	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4618303	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4631029	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696989	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4697243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57134420	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57505034	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60628330	0.90[ASN][1000 genomes]
rs6448076	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs6448091	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6814698	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6819627	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6823352	0.88[CHB][hapmap]
rs6830224	0.89[CEU][hapmap];0.88[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6834778	1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6837235	0.84[ASN][1000 genomes]
rs6839725	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6839776	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6852952	0.89[CEU][hapmap];0.88[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6853293	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71607091	0.97[ASN][1000 genomes]
rs71607093	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71607096	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7656546	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659552	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7661087	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662958	0.97[ASN][1000 genomes]
rs7684151	1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[JPT][hapmap];0.83[TSI][hapmap];0.90[ASN][1000 genomes]
rs7695756	0.97[ASN][1000 genomes]
rs7696044	0.80[CEU][hapmap]
rs9884203	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9884843	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9995230	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21812400-21813600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:21812400-21814000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:21812600-21813800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:21812800-21813600	Enhancers	NH-A	brain
5	chr4:21812800-21813800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:21812800-21813800	Enhancers	HSMM	muscle
7	chr4:21813000-21813600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:21813000-21813600	Enhancers	HUVEC	blood vessel
9	chr4:21813000-21813600	Enhancers	Osteobl	bone
10	chr4:21813200-21813600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:21813200-21813600	Enhancers	HepG2	liver
12	chr4:21813200-21813600	Enhancers	HSMMtube	muscle
13	chr4:21813200-21813600	Enhancers	NHLF	lung

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