Variant report

Variant	rs35733545
Chromosome Location	chr4:21764577-21764578
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR125-4	chr4:21764544-21764652	NONHSAT095742
2	lnc-GPR125-4	chr4:21764544-21764655	NONHSAT095743

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10021133	0.88[ASN][1000 genomes]
rs10029040	0.93[ASN][1000 genomes]
rs1040039	0.85[ASN][1000 genomes]
rs10516398	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10516400	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10805230	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10938854	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938860	0.92[ASN][1000 genomes]
rs11723231	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11725506	0.85[ASN][1000 genomes]
rs11725634	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11725680	0.81[EUR][1000 genomes]
rs11728958	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730531	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11731098	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11734604	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736882	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737531	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11931923	0.93[ASN][1000 genomes]
rs11938269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944162	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12503772	0.97[ASN][1000 genomes]
rs12512545	0.84[ASN][1000 genomes]
rs12512603	0.84[ASN][1000 genomes]
rs13104527	0.88[ASN][1000 genomes]
rs13105122	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13105154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110177	0.82[ASN][1000 genomes]
rs13112610	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13115987	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13119994	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13128189	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13129819	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13132296	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13135188	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13135698	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141904	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142511	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13143578	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13146273	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13147352	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1380271	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1380272	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1398835	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1459279	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1459280	0.97[ASN][1000 genomes]
rs168626	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17496681	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17496959	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17497844	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17497900	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17498614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17563311	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17563769	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17563824	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17564865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17566434	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1824368	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1841187	0.97[ASN][1000 genomes]
rs1841188	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs184860	0.87[ASN][1000 genomes]
rs2044809	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2137650	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2175779	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2175780	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2323128	0.93[ASN][1000 genomes]
rs34008037	0.82[ASN][1000 genomes]
rs34099045	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34375823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34708714	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34839938	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34945659	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35146316	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35161937	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35175333	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35215732	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35489277	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35719625	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35827665	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35842590	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35921228	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35937671	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs360698	0.93[ASN][1000 genomes]
rs4455402	0.93[ASN][1000 genomes]
rs4618303	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4631029	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4696989	0.82[ASN][1000 genomes]
rs4697243	0.85[ASN][1000 genomes]
rs57134420	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57505034	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60628330	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6448076	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448091	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6814698	0.85[ASN][1000 genomes]
rs6819627	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6830224	0.84[ASN][1000 genomes]
rs6834778	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837235	0.81[ASN][1000 genomes]
rs6839725	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6839776	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6852952	0.85[ASN][1000 genomes]
rs6853293	0.85[ASN][1000 genomes]
rs71607091	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71607093	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71607096	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7656546	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7659552	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7661087	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7662958	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684151	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7695756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884203	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9884843	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9995230	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21752200-21764600	Weak transcription	HMEC	breast
2	chr4:21762000-21765800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:21764000-21766000	Enhancers	Colon Smooth Muscle	Colon
4	chr4:21764200-21766400	Enhancers	Fetal Heart	heart

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