Variant report

Variant	rs6837235
Chromosome Location	chr4:21875235-21875236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1040039	0.89[ASN][1000 genomes]
rs10516400	0.84[ASN][1000 genomes]
rs10516407	0.83[ASN][1000 genomes]
rs10805230	0.87[ASN][1000 genomes]
rs10938854	0.81[ASN][1000 genomes]
rs10938860	0.89[ASN][1000 genomes]
rs11723231	0.84[ASN][1000 genomes]
rs11725506	0.89[ASN][1000 genomes]
rs11728958	0.84[ASN][1000 genomes]
rs11731098	0.87[ASN][1000 genomes]
rs11732527	0.83[ASN][1000 genomes]
rs11734604	0.81[ASN][1000 genomes]
rs11736882	0.81[ASN][1000 genomes]
rs11931923	0.87[ASN][1000 genomes]
rs11938269	0.81[ASN][1000 genomes]
rs12503772	0.84[ASN][1000 genomes]
rs12512545	0.91[ASN][1000 genomes]
rs12512603	0.91[ASN][1000 genomes]
rs13104527	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13105122	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13105154	0.81[ASN][1000 genomes]
rs13110177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13112610	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13119994	0.84[ASN][1000 genomes]
rs13128189	0.84[ASN][1000 genomes]
rs13129819	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13132296	0.81[ASN][1000 genomes]
rs13135188	0.81[ASN][1000 genomes]
rs13135698	0.81[ASN][1000 genomes]
rs13141904	0.81[ASN][1000 genomes]
rs13142511	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1398835	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1459279	0.84[ASN][1000 genomes]
rs1459280	0.84[ASN][1000 genomes]
rs168626	0.87[ASN][1000 genomes]
rs17498614	0.81[ASN][1000 genomes]
rs17564865	0.81[ASN][1000 genomes]
rs17566434	0.84[ASN][1000 genomes]
rs17570050	0.81[ASN][1000 genomes]
rs17570140	0.83[ASN][1000 genomes]
rs1841187	0.84[ASN][1000 genomes]
rs1841188	0.84[ASN][1000 genomes]
rs184860	0.81[ASN][1000 genomes]
rs2137650	0.87[ASN][1000 genomes]
rs2175779	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2175780	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2323128	0.87[ASN][1000 genomes]
rs34008037	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34375823	0.81[ASN][1000 genomes]
rs34708714	0.84[ASN][1000 genomes]
rs34839938	0.87[ASN][1000 genomes]
rs35146316	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35161937	0.81[ASN][1000 genomes]
rs35175333	0.84[ASN][1000 genomes]
rs35215732	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35489277	0.83[ASN][1000 genomes]
rs35711081	0.83[ASN][1000 genomes]
rs35719625	0.83[ASN][1000 genomes]
rs35733545	0.81[ASN][1000 genomes]
rs35827665	0.87[ASN][1000 genomes]
rs35921228	0.84[ASN][1000 genomes]
rs35937671	0.84[ASN][1000 genomes]
rs360698	0.87[ASN][1000 genomes]
rs4443267	0.83[ASN][1000 genomes]
rs4455402	0.87[ASN][1000 genomes]
rs4618303	0.84[ASN][1000 genomes]
rs4631029	0.84[ASN][1000 genomes]
rs4696989	0.86[ASN][1000 genomes]
rs4697243	0.89[ASN][1000 genomes]
rs57134420	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57505034	0.84[ASN][1000 genomes]
rs60627982	0.88[AFR][1000 genomes]
rs6448076	0.81[ASN][1000 genomes]
rs6448091	0.84[ASN][1000 genomes]
rs6814698	0.89[ASN][1000 genomes]
rs6819627	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6823352	0.83[ASN][1000 genomes]
rs6830224	0.91[ASN][1000 genomes]
rs6834778	0.81[ASN][1000 genomes]
rs6839725	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6839776	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6852952	0.89[ASN][1000 genomes]
rs6853293	0.89[ASN][1000 genomes]
rs71607091	0.81[ASN][1000 genomes]
rs71607093	0.84[ASN][1000 genomes]
rs71607096	0.87[ASN][1000 genomes]
rs7656546	0.84[ASN][1000 genomes]
rs7659552	0.83[ASN][1000 genomes]
rs7662958	0.81[ASN][1000 genomes]
rs7695756	0.81[ASN][1000 genomes]
rs9884203	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9884843	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9995230	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21874000-21875600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:21874400-21879200	Weak transcription	Fetal Heart	heart
3	chr4:21874600-21875600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:21874600-21876000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:21874800-21875800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:21875000-21875600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:21875200-21875400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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