Variant report

Variant	rs10516485
Chromosome Location	chr4:102752465-102752466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10010487	0.85[AMR][1000 genomes]
rs1352173	0.82[ASN][1000 genomes]
rs1486573	0.82[ASN][1000 genomes]
rs16996753	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17031639	0.85[AMR][1000 genomes]
rs17031656	0.85[AMR][1000 genomes]
rs17031698	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17031705	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17031709	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17031752	0.89[ASN][1000 genomes]
rs17031772	0.89[ASN][1000 genomes]
rs17031808	0.82[ASN][1000 genomes]
rs17031827	0.82[ASN][1000 genomes]
rs17031842	0.82[ASN][1000 genomes]
rs17031852	0.82[ASN][1000 genomes]
rs1833499	0.89[ASN][1000 genomes]
rs2276333	0.82[ASN][1000 genomes]
rs2276334	0.82[ASN][1000 genomes]
rs2866392	0.82[ASN][1000 genomes]
rs41347351	0.82[ASN][1000 genomes]
rs41516147	0.82[ASN][1000 genomes]
rs4356916	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4552465	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs55952681	0.82[ASN][1000 genomes]
rs56757011	0.82[ASN][1000 genomes]
rs56803425	0.82[ASN][1000 genomes]
rs58588907	0.82[ASN][1000 genomes]
rs58630066	0.82[ASN][1000 genomes]
rs58846155	0.82[ASN][1000 genomes]
rs59656969	0.82[ASN][1000 genomes]
rs59893832	0.82[ASN][1000 genomes]
rs60180803	0.82[ASN][1000 genomes]
rs61067451	0.82[ASN][1000 genomes]
rs61546925	0.82[ASN][1000 genomes]
rs73834511	0.82[ASN][1000 genomes]
rs73834519	0.82[ASN][1000 genomes]
rs73834525	0.82[ASN][1000 genomes]
rs73834537	0.82[ASN][1000 genomes]
rs73834541	0.82[ASN][1000 genomes]
rs73834547	0.82[ASN][1000 genomes]
rs73834549	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997690	chr4:102397296-102758125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv537201	chr4:102397296-102758125	Genic enhancers Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv879681	chr4:102641265-102769677	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102751000-102752600	Strong transcription	Primary B cells from cord blood	blood
2	chr4:102751000-102754800	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr4:102752400-102752600	Enhancers	Primary hematopoietic stem cells	blood

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