Variant report

Variant	rs2276333
Chromosome Location	chr4:102876344-102876345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102860897..102862820-chr4:102873982..102876353,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10516485	0.82[ASN][1000 genomes]
rs1352173	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1486573	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16996753	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17031698	0.82[ASN][1000 genomes]
rs17031705	0.82[ASN][1000 genomes]
rs17031709	0.89[ASN][1000 genomes]
rs17031752	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17031772	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17031808	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17031827	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17031842	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17031852	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17031854	1.00[AMR][1000 genomes]
rs17031862	1.00[AMR][1000 genomes]
rs17031870	1.00[AMR][1000 genomes]
rs17031876	1.00[AMR][1000 genomes]
rs1833499	0.93[ASN][1000 genomes]
rs2276334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2866392	1.00[ASN][1000 genomes]
rs41347351	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41516147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4356916	0.82[ASN][1000 genomes]
rs55952681	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56757011	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56803425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57545925	1.00[AMR][1000 genomes]
rs58588907	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58630066	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58846155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59656969	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59859836	1.00[AMR][1000 genomes]
rs59893832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60180803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61067451	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61546925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61547168	1.00[AFR][1000 genomes]
rs72929967	1.00[AMR][1000 genomes]
rs72933903	1.00[AMR][1000 genomes]
rs73834511	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73834519	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73834525	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73834537	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73834541	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73834547	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73834549	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2757074	chr4:102772861-102933949	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2752360	chr4:102790822-102888822	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102869400-102889200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr4:102872200-102883400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:102873200-102883600	Strong transcription	Primary B cells from cord blood	blood
4	chr4:102873600-102876800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:102874000-102877600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:102874200-102878000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:102874400-102877800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:102874600-102876400	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr4:102874600-102876600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:102874800-102876400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:102874800-102876400	Enhancers	HSMMtube	muscle
12	chr4:102874800-102876400	Enhancers	NHEK	skin
13	chr4:102874800-102876600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:102875000-102876400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:102875000-102876400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:102875000-102876400	Enhancers	HSMM	muscle
17	chr4:102875000-102876600	Enhancers	Hela-S3	cervix
18	chr4:102875600-102876400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:102875600-102876400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:102875600-102876400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:102875600-102876400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:102875600-102876400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr4:102875600-102876800	Enhancers	A549	lung
24	chr4:102875800-102876400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:102875800-102882600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:102876200-102876400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:102876200-102876400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr4:102876200-102876600	Enhancers	Placenta Amnion	Placenta Amnion
29	chr4:102876200-102877600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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