Variant report

Variant	rs17031709
Chromosome Location	chr4:102765275-102765276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10010487	0.85[AMR][1000 genomes]
rs10516485	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1352173	0.89[ASN][1000 genomes]
rs1486573	0.89[ASN][1000 genomes]
rs16996753	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17031639	0.85[AMR][1000 genomes]
rs17031656	0.85[AMR][1000 genomes]
rs17031698	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17031705	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17031752	0.96[ASN][1000 genomes]
rs17031772	0.96[ASN][1000 genomes]
rs17031808	0.89[ASN][1000 genomes]
rs17031827	0.89[ASN][1000 genomes]
rs17031842	0.89[ASN][1000 genomes]
rs17031852	0.89[ASN][1000 genomes]
rs1833499	0.96[ASN][1000 genomes]
rs2276333	0.89[ASN][1000 genomes]
rs2276334	0.89[ASN][1000 genomes]
rs2866392	0.89[ASN][1000 genomes]
rs41347351	0.89[ASN][1000 genomes]
rs41516147	0.89[ASN][1000 genomes]
rs4356916	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4552465	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs55952681	0.89[ASN][1000 genomes]
rs56757011	0.89[ASN][1000 genomes]
rs56803425	0.89[ASN][1000 genomes]
rs58588907	0.89[ASN][1000 genomes]
rs58630066	0.89[ASN][1000 genomes]
rs58846155	0.89[ASN][1000 genomes]
rs59656969	0.89[ASN][1000 genomes]
rs59893832	0.89[ASN][1000 genomes]
rs60180803	0.89[ASN][1000 genomes]
rs61067451	0.89[ASN][1000 genomes]
rs61546925	0.89[ASN][1000 genomes]
rs73834511	0.89[ASN][1000 genomes]
rs73834519	0.89[ASN][1000 genomes]
rs73834525	0.89[ASN][1000 genomes]
rs73834537	0.89[ASN][1000 genomes]
rs73834541	0.89[ASN][1000 genomes]
rs73834547	0.89[ASN][1000 genomes]
rs73834549	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879681	chr4:102641265-102769677	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102757400-102784600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:102764200-102765800	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr4:102765200-102765600	Genic enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links