Variant report

Variant	rs10516969
Chromosome Location	chr4:96310163-96310164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10461129	0.95[CHB][hapmap]
rs10461172	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10516970	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12507717	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs12642111	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1351771	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17023728	0.91[CHB][hapmap]
rs2170781	0.82[CEU][hapmap]
rs2865448	0.82[CEU][hapmap];0.84[MEX][hapmap]
rs34058152	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4302469	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4353913	0.91[CHB][hapmap];0.83[CHD][hapmap]
rs6824501	0.91[CHB][hapmap];0.80[CHD][hapmap]
rs6829508	0.90[CHB][hapmap]
rs6829578	0.83[EUR][1000 genomes]
rs6830864	0.95[CHB][hapmap];0.80[CHD][hapmap]
rs6850970	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7654773	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
2	chr4:96296400-96316000	Weak transcription	Fetal Kidney	kidney
3	chr4:96299000-96310200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:96304200-96311600	Weak transcription	Brain Substantia Nigra	brain
5	chr4:96304200-96323000	Weak transcription	Brain Anterior Caudate	brain
6	chr4:96304200-96333000	Weak transcription	Fetal Lung	lung
7	chr4:96305800-96317600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:96306200-96314200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:96306600-96315400	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:96306800-96310200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:96309000-96310400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr4:96309800-96310400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
13	chr4:96309800-96310600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr4:96310000-96311200	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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