Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96294611..96296787-chr4:96298081..96299849,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10516969	0.82[CEU][hapmap];0.84[MEX][hapmap]
rs10516970	0.82[CEU][hapmap];0.84[MEX][hapmap]
rs10856912	0.85[GIH][hapmap]
rs11727932	0.87[EUR][1000 genomes]
rs1483751	0.81[EUR][1000 genomes]
rs1483755	0.87[EUR][1000 genomes]
rs1580419	0.81[EUR][1000 genomes]
rs1586167	0.82[EUR][1000 genomes]
rs17350304	1.00[ASW][hapmap]
rs17415748	1.00[ASW][hapmap]
rs1843017	0.92[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2035468	0.87[EUR][1000 genomes]
rs2128915	0.81[EUR][1000 genomes]
rs2170781	1.00[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2621459	0.83[TSI][hapmap]
rs2621460	0.87[EUR][1000 genomes]
rs2621461	0.83[EUR][1000 genomes]
rs2621464	0.82[EUR][1000 genomes]
rs2621467	0.87[EUR][1000 genomes]
rs2626034	0.92[GIH][hapmap];1.00[LWK][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs2626037	0.85[EUR][1000 genomes]
rs2626038	0.87[EUR][1000 genomes]
rs2626043	0.92[GIH][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs2626053	0.92[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs2626072	0.87[EUR][1000 genomes]
rs2626076	0.87[EUR][1000 genomes]
rs34328980	0.92[GIH][hapmap];1.00[LWK][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs4302469	0.82[CEU][hapmap]
rs6532549	0.89[GIH][hapmap]
rs6829578	0.81[ASN][1000 genomes]
rs7654773	0.82[CEU][hapmap];0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3431304	chr4:96295779-96299277	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
2	chr4:96285800-96305400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:96293400-96303400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:96295400-96302400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:96295400-96302400	Weak transcription	Fetal Lung	lung
6	chr4:96295800-96305400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:96296400-96316000	Weak transcription	Fetal Kidney	kidney
8	chr4:96298200-96299200	Enhancers	Brain Hippocampus Middle	brain
9	chr4:96298400-96303800	Weak transcription	Brain Anterior Caudate	brain
10	chr4:96298600-96303800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:96298800-96300400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:96298800-96303000	Weak transcription	Brain Substantia Nigra	brain
13	chr4:96299000-96303800	Weak transcription	Brain Angular Gyrus	brain
14	chr4:96299000-96305600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:96299000-96310200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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