Variant report

Variant	rs2621459
Chromosome Location	chr4:96294246-96294247
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10006102	0.88[JPT][hapmap]
rs10010074	0.86[JPT][hapmap]
rs10013989	0.88[JPT][hapmap]
rs10026678	1.00[JPT][hapmap]
rs13116085	0.88[JPT][hapmap]
rs13434678	0.88[JPT][hapmap]
rs1351769	0.88[JPT][hapmap]
rs1384869	1.00[JPT][hapmap]
rs1483738	1.00[YRI][hapmap]
rs1483751	1.00[JPT][hapmap]
rs1483753	0.88[JPT][hapmap]
rs1483755	1.00[JPT][hapmap]
rs1580419	1.00[JPT][hapmap]
rs1586164	1.00[JPT][hapmap]
rs1586166	1.00[JPT][hapmap]
rs1843016	1.00[YRI][hapmap]
rs1843017	1.00[JPT][hapmap];0.83[TSI][hapmap]
rs1905457	0.88[JPT][hapmap]
rs1973244	1.00[JPT][hapmap]
rs1973245	0.88[JPT][hapmap]
rs2035468	1.00[JPT][hapmap]
rs2128916	1.00[JPT][hapmap]
rs2170780	1.00[JPT][hapmap]
rs2170781	0.86[MEX][hapmap]
rs2621460	1.00[JPT][hapmap]
rs2621464	0.88[JPT][hapmap]
rs2626033	0.84[JPT][hapmap]
rs2626034	1.00[JPT][hapmap];0.91[TSI][hapmap]
rs2626043	1.00[JPT][hapmap];0.83[TSI][hapmap]
rs2626053	1.00[JPT][hapmap];0.83[TSI][hapmap]
rs2626074	0.88[JPT][hapmap]
rs2865445	1.00[JPT][hapmap]
rs2865446	0.88[JPT][hapmap]
rs2865448	0.83[TSI][hapmap]
rs34328980	1.00[JPT][hapmap];0.83[TSI][hapmap]
rs4130507	1.00[JPT][hapmap]
rs4235419	0.88[JPT][hapmap]
rs4699421	0.88[JPT][hapmap]
rs4699424	0.88[JPT][hapmap]
rs4699847	1.00[YRI][hapmap]
rs4699854	1.00[JPT][hapmap]
rs6532549	0.86[JPT][hapmap]
rs6848679	1.00[YRI][hapmap]
rs7668316	0.88[JPT][hapmap]
rs956159	0.88[JPT][hapmap]
rs997464	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96278800-96295600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
3	chr4:96285800-96295400	Weak transcription	Fetal Kidney	kidney
4	chr4:96285800-96305400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:96291600-96294800	Enhancers	Brain Cingulate Gyrus	brain
6	chr4:96292000-96295600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:96293400-96294600	Weak transcription	Fetal Lung	lung
8	chr4:96293400-96298000	Weak transcription	Brain Angular Gyrus	brain
9	chr4:96293400-96298200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:96293400-96303400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:96293600-96298000	Weak transcription	Brain Anterior Caudate	brain
12	chr4:96293600-96298200	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:96294000-96295200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr4:96294200-96297800	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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