Variant report

Variant	rs2626034
Chromosome Location	chr4:96246887-96246888
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10003526	0.94[ASN][1000 genomes]
rs10006102	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs10009125	0.95[ASN][1000 genomes]
rs10010074	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs10013989	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs10020354	0.94[ASN][1000 genomes]
rs10026678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10027175	0.94[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10029797	0.94[CEU][hapmap];0.89[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10032662	0.94[ASN][1000 genomes]
rs10049501	0.89[CHB][hapmap]
rs10856912	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.85[MEX][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1119769	0.81[CEU][hapmap];0.89[CHB][hapmap];0.89[ASN][1000 genomes]
rs11727932	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11932445	0.99[ASN][1000 genomes]
rs13116085	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs13120566	0.94[ASN][1000 genomes]
rs13135470	0.94[ASN][1000 genomes]
rs13151463	0.95[ASN][1000 genomes]
rs13434678	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs1351769	1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs1384869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1483735	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs1483737	0.83[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.89[ASN][1000 genomes]
rs1483738	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1483751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1483753	1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1483755	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1531866	0.89[CHB][hapmap]
rs1580419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1586164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1586166	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1586167	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1843016	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1843017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1905457	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs1905458	0.94[ASN][1000 genomes]
rs1905459	0.94[ASN][1000 genomes]
rs1973244	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1973245	1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs2035468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2128915	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2128916	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2170780	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2170781	0.81[TSI][hapmap]
rs2621440	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2621447	0.94[ASN][1000 genomes]
rs2621459	1.00[JPT][hapmap];0.91[TSI][hapmap]
rs2621460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2621461	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2621464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2621467	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2626033	1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs2626037	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2626038	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2626043	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2626045	0.86[ASN][1000 genomes]
rs2626053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2626070	0.92[ASN][1000 genomes]
rs2626072	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2626074	1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2626075	0.85[ASN][1000 genomes]
rs2626076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28409980	0.85[ASN][1000 genomes]
rs28440878	0.85[ASN][1000 genomes]
rs28449226	0.85[ASN][1000 genomes]
rs28503338	0.89[ASN][1000 genomes]
rs2865444	0.94[ASN][1000 genomes]
rs2865445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2865446	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs2865448	0.92[GIH][hapmap];1.00[LWK][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs34328980	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3919920	0.94[ASN][1000 genomes]
rs4130507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4235419	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs4699416	0.93[ASN][1000 genomes]
rs4699418	0.89[ASN][1000 genomes]
rs4699420	0.94[ASN][1000 genomes]
rs4699421	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs4699422	0.94[ASN][1000 genomes]
rs4699423	1.00[CHB][hapmap];0.90[CHD][hapmap];0.92[ASN][1000 genomes]
rs4699424	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs4699847	1.00[ASW][hapmap];0.89[CHB][hapmap]
rs4699850	0.89[CHB][hapmap]
rs4699854	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs58661242	0.87[ASN][1000 genomes]
rs62307080	0.94[ASN][1000 genomes]
rs6532548	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6532549	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6817365	0.99[ASN][1000 genomes]
rs6833714	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6842543	0.95[ASN][1000 genomes]
rs6843030	0.95[ASN][1000 genomes]
rs6848679	0.93[CEU][hapmap];0.89[CHB][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6848737	0.89[CHB][hapmap]
rs7667927	0.94[ASN][1000 genomes]
rs7668316	0.90[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs956159	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs988360	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs997464	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9998511	0.94[ASN][1000 genomes]
rs9999811	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv594908	chr4:96246461-96247297	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv471768	chr4:96246500-96247595	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv594909	chr4:96246506-96247297	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv594910	chr4:96246506-96247348	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv594911	chr4:96246506-96247498	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv2763844	chr4:96246506-96255197	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	esv20571	chr4:96246527-96247542	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv594912	chr4:96246643-96247297	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	nsv594913	chr4:96246746-96247498	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv594914	chr4:96246802-96247498	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2626034	FAM190A	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96223000-96252400	Weak transcription	Fetal Lung	lung
2	chr4:96239600-96250000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
4	chr4:96240600-96248200	Weak transcription	Brain Anterior Caudate	brain
5	chr4:96241000-96260800	Weak transcription	Brain Substantia Nigra	brain
6	chr4:96241000-96267600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:96242000-96260200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:96243000-96259600	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:96243400-96263200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:96246200-96255000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:96246800-96247200	Enhancers	Brain Cingulate Gyrus	brain
12	chr4:96246800-96247600	Enhancers	Brain Angular Gyrus	brain

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