Variant report

Variant	rs1483755
Chromosome Location	chr4:96281183-96281184
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96259189..96261851-chr4:96279495..96281301,2	K562	blood:
2	chr4:96277583..96279731-chr4:96280284..96282864,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10003526	0.84[ASN][1000 genomes]
rs10006102	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10009125	0.85[ASN][1000 genomes]
rs10010074	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs10013989	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs10020354	0.86[ASN][1000 genomes]
rs10026678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10027175	0.87[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10029797	0.87[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10032662	0.86[ASN][1000 genomes]
rs10049501	0.89[CHB][hapmap]
rs10856912	0.93[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1119769	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs11727932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932445	0.91[ASN][1000 genomes]
rs13116085	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs13120566	0.86[ASN][1000 genomes]
rs13135470	0.86[ASN][1000 genomes]
rs13151463	0.85[ASN][1000 genomes]
rs13434678	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1351769	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1384869	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1483735	0.89[CHB][hapmap]
rs1483737	0.89[CHB][hapmap]
rs1483738	0.93[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs1483751	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1483753	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs1531866	0.89[CHB][hapmap]
rs1580419	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1586164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1586166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1586167	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1843016	0.93[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs1843017	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1905457	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1905458	0.86[ASN][1000 genomes]
rs1905459	0.86[ASN][1000 genomes]
rs1973244	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1973245	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2035468	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2128915	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2128916	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2170780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2621440	0.90[ASN][1000 genomes]
rs2621447	0.86[ASN][1000 genomes]
rs2621459	1.00[JPT][hapmap]
rs2621460	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2621461	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2621464	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2621467	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2626033	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2626034	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2626037	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2626038	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2626043	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2626045	0.94[ASN][1000 genomes]
rs2626053	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2626070	0.95[ASN][1000 genomes]
rs2626072	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2626074	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs2626075	0.95[ASN][1000 genomes]
rs2626076	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28409980	0.95[ASN][1000 genomes]
rs28440878	0.95[ASN][1000 genomes]
rs28449226	0.95[ASN][1000 genomes]
rs28503338	0.82[ASN][1000 genomes]
rs2865444	0.86[ASN][1000 genomes]
rs2865445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2865446	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs2865448	0.87[EUR][1000 genomes]
rs34328980	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3919920	0.86[ASN][1000 genomes]
rs4130507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4235419	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs4699416	0.83[ASN][1000 genomes]
rs4699418	0.82[ASN][1000 genomes]
rs4699420	0.86[ASN][1000 genomes]
rs4699421	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4699422	0.86[ASN][1000 genomes]
rs4699423	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4699424	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4699847	0.89[CHB][hapmap]
rs4699850	0.89[CHB][hapmap]
rs4699854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs58661242	0.80[ASN][1000 genomes]
rs62307080	0.86[ASN][1000 genomes]
rs6532548	0.82[EUR][1000 genomes]
rs6532549	0.93[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6817365	0.89[ASN][1000 genomes]
rs6829578	0.80[EUR][1000 genomes]
rs6833714	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6842543	0.85[ASN][1000 genomes]
rs6843030	0.85[ASN][1000 genomes]
rs6848679	0.86[CEU][hapmap];0.89[CHB][hapmap]
rs6848737	0.89[CHB][hapmap]
rs7667927	0.86[ASN][1000 genomes]
rs7668316	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs956159	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs988360	0.82[EUR][1000 genomes]
rs997464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9998511	0.86[ASN][1000 genomes]
rs9999811	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96239600-96284400	Weak transcription	Aorta	Aorta
2	chr4:96264400-96283600	Weak transcription	Fetal Stomach	stomach
3	chr4:96272400-96282400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:96273800-96285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:96274200-96281600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:96276800-96281800	Weak transcription	Brain Anterior Caudate	brain
7	chr4:96278800-96281800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:96278800-96295600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:96279200-96284600	Enhancers	Fetal Lung	lung
10	chr4:96279800-96281400	Enhancers	Brain Hippocampus Middle	brain
11	chr4:96280000-96281800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:96280000-96282200	Weak transcription	Liver	Liver
13	chr4:96280000-96284400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:96280200-96281600	Weak transcription	A549	lung
15	chr4:96280400-96281600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:96280600-96283200	Enhancers	Brain Substantia Nigra	brain
17	chr4:96280800-96282800	Enhancers	Fetal Kidney	kidney
18	chr4:96281000-96281800	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links