Variant report

Variant	rs6829578
Chromosome Location	chr4:96313811-96313812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10461172	0.80[EUR][1000 genomes]
rs10516969	0.83[EUR][1000 genomes]
rs10516970	0.83[EUR][1000 genomes]
rs11727932	0.80[EUR][1000 genomes]
rs12642111	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1351771	0.83[EUR][1000 genomes]
rs1483755	0.80[EUR][1000 genomes]
rs2035468	0.80[EUR][1000 genomes]
rs2621460	0.80[EUR][1000 genomes]
rs2621467	0.80[EUR][1000 genomes]
rs2626038	0.80[EUR][1000 genomes]
rs2626043	0.80[EUR][1000 genomes]
rs2626072	0.80[EUR][1000 genomes]
rs2626076	0.80[EUR][1000 genomes]
rs2865448	0.81[ASN][1000 genomes]
rs7654773	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
2	chr4:96296400-96316000	Weak transcription	Fetal Kidney	kidney
3	chr4:96304200-96323000	Weak transcription	Brain Anterior Caudate	brain
4	chr4:96304200-96333000	Weak transcription	Fetal Lung	lung
5	chr4:96305800-96317600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:96306200-96314200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:96306600-96315400	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:96311800-96315600	Weak transcription	Brain Angular Gyrus	brain
9	chr4:96312000-96316800	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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