Variant report

Variant	rs2035468
Chromosome Location	chr4:96289289-96289290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96282890..96284742-chr4:96286355..96289329,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10003526	0.83[ASN][1000 genomes]
rs10006102	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs10009125	0.84[ASN][1000 genomes]
rs10010074	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs10013989	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs10020354	0.85[ASN][1000 genomes]
rs10026678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10027175	0.93[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs10029797	0.93[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs10032662	0.85[ASN][1000 genomes]
rs10049501	0.89[CHB][hapmap]
rs10856912	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs1119769	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs11727932	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11932445	0.90[ASN][1000 genomes]
rs13116085	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs13120566	0.85[ASN][1000 genomes]
rs13135470	0.85[ASN][1000 genomes]
rs13151463	0.84[ASN][1000 genomes]
rs13434678	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1351769	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs1384869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1483735	0.89[CHB][hapmap]
rs1483737	0.83[CEU][hapmap];0.89[CHB][hapmap]
rs1483738	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1483751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1483753	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1483755	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1531866	0.89[CHB][hapmap]
rs1580419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1586164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1586166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1586167	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1843016	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs1843017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1905457	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1905458	0.85[ASN][1000 genomes]
rs1905459	0.85[ASN][1000 genomes]
rs1973244	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1973245	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2128915	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2128916	0.80[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2170780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2621440	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2621447	0.85[ASN][1000 genomes]
rs2621459	1.00[JPT][hapmap]
rs2621460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2621461	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2621464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2621467	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2626033	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2626034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2626037	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2626038	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2626043	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2626045	0.92[ASN][1000 genomes]
rs2626053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2626070	0.93[ASN][1000 genomes]
rs2626072	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2626074	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs2626075	0.91[ASN][1000 genomes]
rs2626076	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28409980	0.91[ASN][1000 genomes]
rs28440878	0.91[ASN][1000 genomes]
rs28449226	0.91[ASN][1000 genomes]
rs28503338	0.81[ASN][1000 genomes]
rs2865444	0.85[ASN][1000 genomes]
rs2865445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2865446	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs2865448	0.87[EUR][1000 genomes]
rs34328980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3919920	0.85[ASN][1000 genomes]
rs4130507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4235419	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs4699416	0.82[ASN][1000 genomes]
rs4699418	0.81[ASN][1000 genomes]
rs4699420	0.85[ASN][1000 genomes]
rs4699421	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4699422	0.85[ASN][1000 genomes]
rs4699423	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs4699424	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4699847	0.89[CHB][hapmap]
rs4699850	0.89[CHB][hapmap]
rs4699854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs62307080	0.85[ASN][1000 genomes]
rs6532548	0.82[EUR][1000 genomes]
rs6532549	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs6817365	0.87[ASN][1000 genomes]
rs6829578	0.80[EUR][1000 genomes]
rs6833714	0.83[EUR][1000 genomes]
rs6842543	0.84[ASN][1000 genomes]
rs6843030	0.84[ASN][1000 genomes]
rs6848679	0.93[CEU][hapmap];0.89[CHB][hapmap]
rs6848737	0.89[CHB][hapmap]
rs7667927	0.85[ASN][1000 genomes]
rs7668316	0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs956159	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs988360	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs997464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9998511	0.85[ASN][1000 genomes]
rs9999811	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96278800-96295600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:96284400-96291600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
4	chr4:96285400-96291600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:96285400-96291600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:96285600-96293200	Weak transcription	Fetal Heart	heart
7	chr4:96285800-96291600	Weak transcription	Brain Angular Gyrus	brain
8	chr4:96285800-96295400	Weak transcription	Fetal Kidney	kidney
9	chr4:96285800-96305400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:96288600-96289600	Enhancers	Brain Substantia Nigra	brain
11	chr4:96289000-96289400	Enhancers	Brain Hippocampus Middle	brain
12	chr4:96289000-96289800	Enhancers	Brain Inferior Temporal Lobe	brain

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