Variant report

Variant	rs17350304
Chromosome Location	chr4:96123261-96123262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17415748	0.83[GIH][hapmap]
rs2865448	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96098000-96127000	Weak transcription	Right Atrium	heart
2	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
3	chr4:96110600-96133800	Weak transcription	Gastric	stomach
4	chr4:96110600-96134000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:96112600-96125600	Weak transcription	Ovary	ovary
6	chr4:96112600-96127200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:96112800-96125400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:96115400-96134000	Weak transcription	Aorta	Aorta
9	chr4:96115800-96132800	Weak transcription	Right Ventricle	heart
10	chr4:96116200-96123600	Weak transcription	Brain Substantia Nigra	brain
11	chr4:96116800-96123400	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:96116800-96124800	Weak transcription	Brain Angular Gyrus	brain
13	chr4:96118600-96125000	Strong transcription	Fetal Stomach	stomach
14	chr4:96118800-96126000	Strong transcription	Fetal Lung	lung
15	chr4:96119600-96128200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:96119800-96123600	Weak transcription	Osteobl	bone
17	chr4:96121400-96124000	Strong transcription	Brain Cingulate Gyrus	brain
18	chr4:96122000-96124200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:96122400-96125600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:96122600-96127600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:96122800-96124200	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr4:96123000-96124200	Strong transcription	Brain Anterior Caudate	brain
23	chr4:96123000-96125200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:96123000-96125600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:96123000-96131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:96123200-96123800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:96123200-96124200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:96123200-96124200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:96123200-96124400	Enhancers	Brain Germinal Matrix	brain

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