Variant report

Variant	rs17415748
Chromosome Location	chr4:96103745-96103746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:96103609..96107002-chr4:96107202..96110546,3	MCF-7	breast:
2	chr4:96103428..96105512-chr4:96106717..96108756,2	K562	blood:
3	chr4:96103400..96106252-chr4:96114809..96117645,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13108149	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs17345417	1.00[ASW][hapmap]
rs17350304	0.83[GIH][hapmap]
rs2865448	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96084600-96111800	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:96087600-96107000	Weak transcription	A549	lung
3	chr4:96091000-96111600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:96091400-96109400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:96098000-96127000	Weak transcription	Right Atrium	heart
6	chr4:96098800-96105200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:96099000-96105400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:96099400-96109400	Weak transcription	Dnd41	blood
9	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
10	chr4:96101000-96104400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:96101600-96104200	Enhancers	Fetal Thymus	thymus
12	chr4:96101600-96106600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:96101800-96104200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:96101800-96104200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr4:96101800-96104400	Strong transcription	Aorta	Aorta
16	chr4:96101800-96104800	Strong transcription	Fetal Stomach	stomach
17	chr4:96102000-96105800	Strong transcription	Fetal Lung	lung
18	chr4:96102400-96105200	Weak transcription	Brain Anterior Caudate	brain
19	chr4:96102800-96107600	Weak transcription	Brain Germinal Matrix	brain
20	chr4:96102800-96107800	Weak transcription	Spleen	Spleen
21	chr4:96102800-96110000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:96103000-96108000	Weak transcription	Ovary	ovary
23	chr4:96103000-96111600	Weak transcription	Fetal Brain Male	brain
24	chr4:96103200-96104000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:96103200-96104000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:96103200-96104400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:96103200-96105200	Weak transcription	Brain Angular Gyrus	brain
28	chr4:96103200-96105600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:96103200-96111200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr4:96103400-96103800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:96103400-96108000	Weak transcription	K562	blood
32	chr4:96103400-96109400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr4:96103400-96109800	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:96103600-96104800	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr4:96103600-96105000	Weak transcription	Brain Substantia Nigra	brain
36	chr4:96103600-96123000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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