Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10001315	0.89[ASN][1000 genomes]
rs10006738	0.90[ASN][1000 genomes]
rs10015131	0.89[ASN][1000 genomes]
rs10026084	0.90[ASN][1000 genomes]
rs10213024	0.98[ASN][1000 genomes]
rs11937339	0.88[ASN][1000 genomes]
rs17025053	0.90[ASN][1000 genomes]
rs17025056	0.96[ASN][1000 genomes]
rs1877917	0.89[ASN][1000 genomes]
rs1877918	0.89[ASN][1000 genomes]
rs28406426	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28461695	0.89[ASN][1000 genomes]
rs28537791	0.85[ASN][1000 genomes]
rs28539021	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28548740	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28600036	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4154	0.91[ASN][1000 genomes]
rs6852225	0.91[ASN][1000 genomes]
rs7674977	0.85[ASN][1000 genomes]
rs925724	0.90[ASN][1000 genomes]
rs9998845	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv879630	chr4:96961891-97047829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97019000-97023600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:97019200-97023400	Weak transcription	NH-A	brain

Quick Search: