Variant report
| Variant | rs6852225 |
|---|---|
| Chromosome Location | chr4:97024842-97024843 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:97015932..97018405-chr4:97024255..97026291,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10001315 | 0.81[ASN][1000 genomes] |
| rs10006738 | 0.82[ASN][1000 genomes] |
| rs10015131 | 0.81[ASN][1000 genomes] |
| rs10026084 | 0.82[ASN][1000 genomes] |
| rs10213024 | 0.90[ASN][1000 genomes] |
| rs10516988 | 0.91[ASN][1000 genomes] |
| rs11097493 | 0.91[AFR][1000 genomes] |
| rs11937339 | 0.96[ASN][1000 genomes] |
| rs17025053 | 0.82[ASN][1000 genomes] |
| rs17025056 | 0.88[ASN][1000 genomes] |
| rs1877917 | 0.81[ASN][1000 genomes] |
| rs1877918 | 0.81[ASN][1000 genomes] |
| rs28461695 | 0.81[ASN][1000 genomes] |
| rs28537791 | 0.84[ASN][1000 genomes] |
| rs28548740 | 0.91[ASN][1000 genomes] |
| rs28600036 | 0.90[ASN][1000 genomes] |
| rs34642089 | 0.91[AFR][1000 genomes] |
| rs4154 | 0.88[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4279215 | 0.86[ASN][1000 genomes] |
| rs6828859 | 0.91[AFR][1000 genomes] |
| rs6851001 | 0.91[AFR][1000 genomes] |
| rs7674977 | 0.84[ASN][1000 genomes] |
| rs925724 | 0.82[ASN][1000 genomes] |
| rs9998845 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv594915 | chr4:96628653-97086618 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv879630 | chr4:96961891-97047829 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:97023800-97025000 | Enhancers | Fetal Heart | heart |
