Variant report

Variant	rs28600036
Chromosome Location	chr4:96990664-96990665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10001315	0.91[ASN][1000 genomes]
rs10006738	0.92[ASN][1000 genomes]
rs10015131	0.91[ASN][1000 genomes]
rs10026084	0.92[ASN][1000 genomes]
rs10213024	1.00[ASN][1000 genomes]
rs10516988	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11937339	0.90[ASN][1000 genomes]
rs17025053	0.92[ASN][1000 genomes]
rs17025056	0.98[ASN][1000 genomes]
rs1877917	0.91[ASN][1000 genomes]
rs1877918	0.91[ASN][1000 genomes]
rs28406426	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28461695	0.91[ASN][1000 genomes]
rs28537791	0.87[ASN][1000 genomes]
rs28539021	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28548740	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4154	0.90[ASN][1000 genomes]
rs4279215	0.80[ASN][1000 genomes]
rs6852225	0.90[ASN][1000 genomes]
rs7674977	0.87[ASN][1000 genomes]
rs925724	0.92[ASN][1000 genomes]
rs9998845	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv879630	chr4:96961891-97047829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96988400-96990800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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