Variant report

Variant	rs10518675
Chromosome Location	chr15:52318265-52318266
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52318091..52320870-chr15:52417132..52419787,2	K562	blood:
2	chr15:52313958..52316321-chr15:52317299..52319618,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10152141	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12324384	0.83[EUR][1000 genomes]
rs12324807	0.83[EUR][1000 genomes]
rs13379854	0.83[EUR][1000 genomes]
rs16964694	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16964700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16964705	0.98[ASN][1000 genomes]
rs16964720	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17540338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17612255	0.93[ASN][1000 genomes]
rs17612326	0.85[ASN][1000 genomes]
rs2001741	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2017967	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2306793	1.00[EUR][1000 genomes]
rs2414120	0.84[ASN][1000 genomes]
rs2414123	0.98[ASN][1000 genomes]
rs2441779	0.86[ASN][1000 genomes]
rs2470593	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2470594	0.86[ASN][1000 genomes]
rs2470595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2554340	0.84[ASN][1000 genomes]
rs2899484	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3099571	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4375608	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4456445	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4491448	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4774606	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775993	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4775995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775997	1.00[CHB][hapmap]
rs55705935	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55714716	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55873482	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56307802	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56677715	0.95[ASN][1000 genomes]
rs58000475	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58936667	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61546369	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177328	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs732097	0.90[CHB][hapmap]
rs7359204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74013636	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74013638	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74013640	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74013641	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74013642	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74013644	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013645	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013646	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013647	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013648	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013653	0.98[ASN][1000 genomes]
rs74013654	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013656	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74013657	0.93[ASN][1000 genomes]
rs74013659	0.85[ASN][1000 genomes]
rs74013661	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7497554	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs751560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8027276	0.83[EUR][1000 genomes]
rs8033365	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8033840	0.95[ASN][1000 genomes]
rs8036048	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8041281	0.86[ASN][1000 genomes]
rs9796534	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047260	chr15:52257100-52337418	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv1050664	chr15:52265723-52342101	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1536	chr15:52276293-52320919	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv530681	chr15:52297253-52390470	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52312800-52345400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:52313400-52325400	Weak transcription	Aorta	Aorta
3	chr15:52313600-52324800	Weak transcription	Fetal Stomach	stomach
4	chr15:52313600-52325400	Weak transcription	Thymus	Thymus
5	chr15:52313800-52329400	Weak transcription	Fetal Heart	heart
6	chr15:52314000-52320600	Weak transcription	Primary T cells from cord blood	blood
7	chr15:52314400-52325400	Weak transcription	Fetal Lung	lung
8	chr15:52314400-52359800	Weak transcription	Fetal Brain Male	brain
9	chr15:52314600-52320400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:52314600-52323800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr15:52314600-52325200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:52314600-52325400	Weak transcription	Esophagus	oesophagus
13	chr15:52314600-52325400	Weak transcription	HSMM	muscle
14	chr15:52314600-52330600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:52314600-52332200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:52314800-52320400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:52314800-52320800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:52314800-52320800	Weak transcription	Primary B cells from cord blood	blood
19	chr15:52314800-52321600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:52314800-52321600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:52314800-52321800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:52314800-52322000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:52314800-52322200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr15:52314800-52322200	Weak transcription	Spleen	Spleen
25	chr15:52314800-52323000	Weak transcription	Fetal Intestine Small	intestine
26	chr15:52314800-52324600	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:52314800-52325000	Weak transcription	Fetal Brain Female	brain
28	chr15:52314800-52325200	Weak transcription	NHDF-Ad	bronchial
29	chr15:52314800-52325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:52314800-52325400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:52314800-52325400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:52314800-52325400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:52314800-52325400	Weak transcription	Right Ventricle	heart
34	chr15:52314800-52329400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr15:52314800-52330200	Weak transcription	Ovary	ovary
36	chr15:52314800-52330200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:52314800-52331200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr15:52315000-52318800	Enhancers	Liver	Liver
39	chr15:52315000-52320600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:52315200-52324800	Weak transcription	Fetal Thymus	thymus
41	chr15:52315200-52331800	Weak transcription	Colonic Mucosa	Colon
42	chr15:52315600-52320400	Weak transcription	Fetal Intestine Large	intestine
43	chr15:52315600-52320600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr15:52315600-52320600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:52315600-52320600	Weak transcription	NH-A	brain
46	chr15:52315600-52320800	Weak transcription	HMEC	breast
47	chr15:52315600-52321600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:52315600-52321800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:52315600-52321800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr15:52315600-52321800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links