Variant report

Variant	rs74013645
Chromosome Location	chr15:52320877-52320878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52320796..52323655-chr15:52329360..52331417,2	MCF-7	breast:
2	chr15:52320626..52323301-chr15:52332648..52334173,2	MCF-7	breast:
3	chr15:52310333..52312258-chr15:52319867..52323299,4	K562	blood:
4	chr15:52307141..52308923-chr15:52319754..52321972,2	K562	blood:
5	chr15:52319102..52323371-chr15:52325005..52329761,6	K562	blood:

Variant related genes	Relation type
ENSG00000259438	Chromatin interaction
ENSG00000069956	Chromatin interaction
ENSG00000259398	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10152141	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10518675	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324384	0.83[EUR][1000 genomes]
rs12324807	0.83[EUR][1000 genomes]
rs13379854	0.83[EUR][1000 genomes]
rs16964694	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16964700	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16964705	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16964720	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17540338	0.85[ASN][1000 genomes]
rs17612255	0.93[ASN][1000 genomes]
rs17612326	0.85[ASN][1000 genomes]
rs2001741	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2017967	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246726	0.86[ASN][1000 genomes]
rs2306793	1.00[EUR][1000 genomes]
rs2414120	0.84[ASN][1000 genomes]
rs2414123	0.98[ASN][1000 genomes]
rs2441779	0.86[ASN][1000 genomes]
rs2470593	0.86[ASN][1000 genomes]
rs2470594	0.86[ASN][1000 genomes]
rs2470595	0.88[ASN][1000 genomes]
rs2554340	0.84[ASN][1000 genomes]
rs2899484	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3099571	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4375608	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4456445	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4774606	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775993	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4775995	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775996	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55705935	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55714716	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55873482	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56307802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56677715	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58000475	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58936667	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61546369	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177328	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7359204	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74013636	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74013638	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74013640	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74013641	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74013642	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74013644	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013646	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013647	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013648	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013653	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs74013654	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74013656	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74013657	0.93[ASN][1000 genomes]
rs74013659	0.85[ASN][1000 genomes]
rs74013661	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7497554	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs751560	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8027276	0.83[EUR][1000 genomes]
rs8033365	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8033840	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8036048	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8041281	0.86[ASN][1000 genomes]
rs9796534	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047260	chr15:52257100-52337418	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv1050664	chr15:52265723-52342101	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1536	chr15:52276293-52320919	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv530681	chr15:52297253-52390470	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv984198	chr15:52319726-52481137	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52312800-52345400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:52313400-52325400	Weak transcription	Aorta	Aorta
3	chr15:52313600-52324800	Weak transcription	Fetal Stomach	stomach
4	chr15:52313600-52325400	Weak transcription	Thymus	Thymus
5	chr15:52313800-52329400	Weak transcription	Fetal Heart	heart
6	chr15:52314400-52325400	Weak transcription	Fetal Lung	lung
7	chr15:52314400-52359800	Weak transcription	Fetal Brain Male	brain
8	chr15:52314600-52323800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr15:52314600-52325200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:52314600-52325400	Weak transcription	Esophagus	oesophagus
11	chr15:52314600-52325400	Weak transcription	HSMM	muscle
12	chr15:52314600-52330600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:52314600-52332200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:52314800-52321600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:52314800-52321600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr15:52314800-52321800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:52314800-52322000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:52314800-52322200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr15:52314800-52322200	Weak transcription	Spleen	Spleen
20	chr15:52314800-52323000	Weak transcription	Fetal Intestine Small	intestine
21	chr15:52314800-52324600	Weak transcription	Fetal Muscle Leg	muscle
22	chr15:52314800-52325000	Weak transcription	Fetal Brain Female	brain
23	chr15:52314800-52325200	Weak transcription	NHDF-Ad	bronchial
24	chr15:52314800-52325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:52314800-52325400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:52314800-52325400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:52314800-52325400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr15:52314800-52325400	Weak transcription	Right Ventricle	heart
29	chr15:52314800-52329400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:52314800-52330200	Weak transcription	Ovary	ovary
31	chr15:52314800-52330200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr15:52314800-52331200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr15:52315200-52324800	Weak transcription	Fetal Thymus	thymus
34	chr15:52315200-52331800	Weak transcription	Colonic Mucosa	Colon
35	chr15:52315600-52321600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:52315600-52321800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:52315600-52321800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr15:52315600-52321800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:52315600-52325400	Weak transcription	Fetal Kidney	kidney
40	chr15:52315600-52325400	Weak transcription	Gastric	stomach
41	chr15:52315600-52325400	Weak transcription	HUVEC	blood vessel
42	chr15:52315600-52325600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr15:52315600-52329400	Weak transcription	Right Atrium	heart
44	chr15:52315600-52332200	Weak transcription	NHLF	lung
45	chr15:52315800-52321000	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:52315800-52321800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:52315800-52322000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:52315800-52322000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr15:52315800-52322000	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:52315800-52322000	Weak transcription	Dnd41	blood

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