Variant report

Variant	rs10518761
Chromosome Location	chr15:54535156-54535157
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11629837	0.89[CEU][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs11630328	1.00[ASN][1000 genomes]
rs11630329	1.00[ASN][1000 genomes]
rs11630774	0.91[CEU][hapmap]
rs11635342	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635750	1.00[ASN][1000 genomes]
rs11636703	1.00[CEU][hapmap];0.88[ASN][1000 genomes]
rs11637720	1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs11638873	0.91[CEU][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs12101497	0.90[CEU][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs16953182	0.91[CEU][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.88[ASN][1000 genomes]
rs16974384	0.91[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16974387	0.81[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16974390	0.91[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16974409	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs16974431	0.91[CEU][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.88[ASN][1000 genomes]
rs16974443	0.91[CEU][hapmap];0.88[ASN][1000 genomes]
rs16974464	1.00[CEU][hapmap];0.88[ASN][1000 genomes]
rs2414293	0.88[ASN][1000 genomes]
rs28523822	0.88[ASN][1000 genomes]
rs4502150	0.91[CEU][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.88[ASN][1000 genomes]
rs4776217	0.87[EUR][1000 genomes]
rs4776221	0.91[CEU][hapmap];0.94[GIH][hapmap];0.88[ASN][1000 genomes]
rs4776223	0.91[CEU][hapmap];0.88[ASN][1000 genomes]
rs62010031	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62010056	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011962	1.00[ASN][1000 genomes]
rs62012000	0.88[ASN][1000 genomes]
rs6493671	0.91[CEU][hapmap];0.88[ASN][1000 genomes]
rs8028896	0.91[CEU][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs8039159	0.91[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9806492	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs9944267	0.84[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1043666	chr15:54415970-54548495	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10518761	ONECUT1	cis	cerebellum	SCAN
rs10518761	CEP152	cis	cerebellum	SCAN
rs10518761	USP8	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54519400-54549600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:54531400-54544800	Weak transcription	Fetal Lung	lung

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